result

Gene information

Detail information of AfisC3G00272

Location

Gene	Chr	Start	End	Strand
AfisC3G00272	chr3	46820922	46822241	+

Sequences

CDS

>AfisC3G00272
ATGGACGAGGTTCTTGAATGCGCCGCCACAGGCAGGCTCAAAGGACTCCAGATCCTGGTATCTGAAAATCCGACATTGATAGACGCGATCGGACCTTGGACCATCCGGTCAAAAAAATCAAACGATTTCATCCTTGATGGTCTAACGCCTTTAATCGTCGCTGCCGCCTACGGAAGCCTCGAAGTCGTATCCTACATCCTATCCTTCCCTCACATCGACGTCAACCGCCGCATCGGCAGCGAACTCACCACCGCGCTTCATTCCGCTGCATCCAGCAGGTCCCCATGCGCCGTCGCCGTGGTGCGTATGTTGCTCGCTGCAGGCGCGGATCGGAACTTGGTCGATTCCTATGGTTTGAAACCTTCCGATTACGCTTTCGCAAATCCACATTTAGGGTCAGATGGCCTACAAGAAATTACTGGACTCCTTCGCTGCGGCAACGATGCAATCAAAACCCCACATTTGGGTTCTTCCACATCAGATGGTTTTATGATGTATTCATTCAGAGTGCACCCTTGTAAAATTAAATTTTCCCATGATTGGGCAGGTTGCGCCTTCTTTCATCCAGGGGAAAAAGCTAGAAGAAGAGACCCAAGAATGTACCACTACTCTTCTGAACTATGTCCATATTTCAAAGCCGGATTTTGCAATAAAGGAGATAAGTGCAAATATGCTCACGGACCATTCGAGTCTTGGTTGCATCCCTCGCGGTATAGGACAAAGAGGTGTACGGATGGGGGGAAATGTTCTAAAAAGATTTGTTTCTTTGCGCATAGTGACAATGAGTTGAGGGTTGGCTCTGATGTTCCATTCAATCCCCCAATGGTGCATAATGTGCCCACATTGCATTTGCCTAGTGGTGATATGGATAGTATAAATTGGCCATTCCTTAGTCCGAGGGCCATGCCGCCTCCAAATCTTGATCATGGTATGAATTTGCATTATGTTCCTGGTTCAAATGTGGCCTACGGGGGTTCGAATTTGAATTTGAATCCGGAAGTTATAGGTTATCGAGGGCATCATATTTTCAATCAACCGGCATTTGGAATCGATGGTCATCATGATGATGTAGGTGGTCAGATTGCTGAGCTTGGAGATCAGTTTCATAATATGGAACTTGGTGGTAATGGCGAAGAGTCTGTAAAGACCGAGCAAGAACTTATGGGAAATTAG

Protein

Gene

>AfisC3G00272
CTTTTCTATAATTCTACTATGGACGAGGTTCTTGAATGCGCCGCCACAGGCAGGCTCAAAGGACTCCAGATCCTGGTATCTGAAAATCCGACATTGATAGACGCGATCGGACCTTGGACCATCCGGTCAAAAAAATCAAACGATTTCATCCTTGATGGTCTAACGCCTTTAATCGTCGCTGCCGCCTACGGAAGCCTCGAAGTCGTATCCTACATCCTATCCTTCCCTCACATCGACGTCAACCGCCGCATCGGCAGCGAACTCACCACCGCGCTTCATTCCGCTGCATCCAGCAGGTCCCCATGCGCCGTCGCCGTGGTGCGTATGTTGCTCGCTGCAGGCGCGGATCGGAACTTGGTCGATTCCTATGGTTTGAAACCTTCCGATTACGCTTTCGCAAATCCACATTTAGGGTCAGATGGCCTACAAGAAATTACTGGACTCCTTCGCTGCGGCAACGATGCAATCAAAACCCCACATTTGGGTTCTTCCACATCAGATGGTTTTATGATGTATTCATTCAGAGTGCACCCTTGTAAAATTAAATTTTCCCATGATTGGGCAGGTTGCGCCTTCTTTCATCCAGGGGAAAAAGCTAGAAGAAGAGACCCAAGAATGTACCACTACTCTTCTGAACTATGTCCATATTTCAAAGCCGGATTTTGCAATAAAGGAGATAAGTGCAAATATGCTCACGGACCATTCGAGTCTTGGTTGCATCCCTCGCGGTATAGGACAAAGAGGTGTACGGATGGGGGGAAATGTTCTAAAAAGATTTGTTTCTTTGCGCATAGTGACAATGAGTTGAGGGTTGGCTCTGATGTTCCATTCAATCCCCCAATGGTGCATAATGTGCCCACATTGCATTTGCCTAGTGGTGATATGGATAGTATAAATTGGCCATTCCTTAGTCCGAGGGCCATGCCGCCTCCAAATCTTGATCATGGTATGAATTTGCATTATGTTCCTGGTTCAAATGTGGCCTACGGGGGTTCGAATTTGAATTTGAATCCGGAAGTTATAGGTTATCGAGGGCATCATATTTTCAATCAACCGGCATTTGGAATCGATGGTCATCATGATGATGTAGGTGGTCAGATTGCTGAGCTTGGAGATCAGTTTCATAATATGGAACTTGGTGGTAATGGCGAAGAGTCTGTAAAGACCGAGCAAGAACTTATGGGAAATTAGTTACAGTCTGATCCTGAATGGAAAAGTTGATTTTTCCTGACAATAACACTTCAGATTGATGTAAAAGCATCGGTTTAATTCTTTGCGAATAAAAGGTCTTTTACTGTTTCTCTTTATGACTGTCGTGCT

Functional annotation

Database	accession number	e-value	annotation
nr	GER25886.1	1.0e-68	zinc finger CCCH domain-containing protein
Swissprot	Q10EL1.1	5.3e-62	Zinc finger CCCH domain-containing protein 24
trEMBL	A0A5A7NZD2	7.4e-69	Zinc finger CCCH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G41900.1	39.14	2e-61	233	OXS2;TZF7	CCCH-type zinc finger protein with ARM repeat domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G00272	AT2G41900.1	327	139	5	4	270	48	374	39.14	2e-61	233
AfisC3G00272	AT2G40140.2	284	146	2	4	264	33	316	40.49	3e-56	215
AfisC3G00272	AT2G40140.1	284	146	2	4	264	33	316	40.49	3e-56	215

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12796.4	Ank_2	Repeat	41	114	37.2	3.1e-09
PF00642.21	zf-CCCH	Family	203	228	28.8	7.3e-07

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0000932	C	cytoplasmic mRNA processing body
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003727	F	single-stranded RNA binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006979	P	response to oxidative stress
GO:0008270	F	zinc ion binding
GO:0009409	P	response to cold
GO:0009793	P	embryo development ending in seed dormancy
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010150	P	leaf senescence
GO:0010187	P	negative regulation of seed germination
GO:0010200	P	response to chitin
GO:0010494	C	cytoplasmic stress granule
GO:0061157	P	mRNA destabilization

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network