result

Gene information

Detail information of AfisC3G00294

Location

Gene	Chr	Start	End	Strand
AfisC3G00294	chr3	50389803	50391635	-

Sequences

CDS

>AfisC3G00294
ATGCTACACAGCCTGCATCCTCCTCAATCCAATGCACACATCATGAGACCCAACAAAAGAAAGAAGCAAGACAGTGCTAGTGCATCCTCCTCTGCTTCCATTCCGGAAGAAGGACCGGCCCATGGGCTCGAAGCCCAAGGACTAGGCCTGCTAGGGCTTCTTCTCCAGTGCGCAGAAGCCGTTTCCATGGATCACCTGCCTCAAGCACGCGATCTTCTCCTCGAAATCACAGAACTGTCTTCTCCGTTCGGATCTTCGCCGGAGCGCGTAGCCGCATACTTCGCCGACGCTCTCAACGCACGGATCTTCACTTCTTACTTAGCTTCGTACTCTCCTCTAACCTTAAAGAAATTCACCGTATCCCAAAATTTGAAGATTTCACAAGCGTTTCAAATCCTCAATTCGGTTTCTCCCCTAATCAAATTCTCGCACTTCACCGCGAATCAAGCGATATATCAAGCTTTGGAAGGGTTGGGAAGCGAGGACGGAGTGCACATAATCGATTTCGACATAATGCAGGGGCTCCAATGGCCTGGGTTGTTCCATATACTCGCGTCAAGGGCCGTGAAGCTTAGGTCGATTAGGGTTACAGGAATGGGCGCTTCGATTGAGCTTCTGGAAGCTACCGGAAGAAGGCTTTGTGAATTTGCGGCGGCGGTGGGTTTGCCGTTCGAGTTTTGTCCGCTGGAGGGTAAAATCGGAAATATCACCGATGCGTCCGTGCTGTTTCCTCGTGACTGTAGAGAAGTTACAGTAGTGCATTGGATGCAGCATTGCCTTTATGATGTTACCGGGTCGGACTTAGGGACATTGGAGATGATCAAGTTGATAAGGCCGAAACTTGTTATGGTTGTGGAGCAGGACTTGAGCCATGCTGGTGATTTCCTCGCAAGGTTCGTTGAAGCATTGCATCACTATTCGGCGTTGTTCGACGCGTTAGGAGACGGTTTACATGAAGAAAGTTTGAAGAGGCACACGGTGGAGCGACAAGTGTTTGGAGCAGAGATACGGAATATCGTGGCGGTTGGAGGACCGAAAAGGACGGGAGAAGTGAAGGTGGAGAAATGGGGGGAGGAGATGAGGAAAGTTGGGTTGGAGAGAGTGAGTTTGGAAGGGAGTCCGGCTGCGCAGGCGAATTTGCTGTTGGGTATGTTTCCATGGAAAGGTTATACGCTGGTTGAAGAAAATGGAAGTTTGAAGTTGGGATGGAAGGATTTGCCGTTGCTGACTGCGTCTGCATGGCAATTTGAAGGCGGTTGTGATGGTGGTGTCACCAATGATTTTAATGTTTGA

Protein

Gene

>AfisC3G00294
TTCTTATCTCATCATAATCAAAACATTTCTTCAACTGGTCCTGATAACTAAACTAAACAAATCACTTAAGACAATAACATCGTATTCCAAACCTAATCATTCACTAAAATACAGCTAATAAACACCGATAAATTCAACAAAATGACAAGCATAAGACGGCAGAAGTGAATATTATGATCCAACTTTTGCAGTTTGAATAAATGCTGAAAAATAAACAATTAAATCTAACGCCGTGAACCAACACCTGTGGCAACTACTAAACTAAGCTACTAACCTTTGGTCTTCATCATTCTTGAAAGCAAAGAAAGCTGCTCTTCATCATGCTACACAGCCTGCATCCTCCTCAATCCAATGCACACATCATGAGACCCAACAAAAGAAAGAAGCAAGACAGTGCTAGTGCATCCTCCTCTGCTTCCATTCCGGAAGAAGGACCGGCCCATGGGCTCGAAGCCCAAGGACTAGGCCTGCTAGGGCTTCTTCTCCAGTGCGCAGAAGCCGTTTCCATGGATCACCTGCCTCAAGCACGCGATCTTCTCCTCGAAATCACAGAACTGTCTTCTCCGTTCGGATCTTCGCCGGAGCGCGTAGCCGCATACTTCGCCGACGCTCTCAACGCACGGATCTTCACTTCTTACTTAGCTTCGTACTCTCCTCTAACCTTAAAGAAATTCACCGTATCCCAAAATTTGAAGATTTCACAAGCGTTTCAAATCCTCAATTCGGTTTCTCCCCTAATCAAATTCTCGCACTTCACCGCGAATCAAGCGATATATCAAGCTTTGGAAGGGTTGGGAAGCGAGGACGGAGTGCACATAATCGATTTCGACATAATGCAGGGGCTCCAATGGCCTGGGTTGTTCCATATACTCGCGTCAAGGGCCGTGAAGCTTAGGTCGATTAGGGTTACAGGAATGGGCGCTTCGATTGAGCTTCTGGAAGCTACCGGAAGAAGGCTTTGTGAATTTGCGGCGGCGGTGGGTTTGCCGTTCGAGTTTTGTCCGCTGGAGGGTAAAATCGGAAATATCACCGATGCGTCCGTGCTGTTTCCTCGTGACTGTAGAGAAGTTACAGTAGTGCATTGGATGCAGCATTGCCTTTATGATGTTACCGGGTCGGACTTAGGGACATTGGAGATGATCAAGTTGATAAGGCCGAAACTTGTTATGGTTGTGGAGCAGGACTTGAGCCATGCTGGTGATTTCCTCGCAAGGTAGGCCAAATAAATTGATATTTTTCTTTTTCAAATTAAAATTTTATGAACGGTTCTTGATTTATCCGTTACATTACAGGTTCGTTGAAGCATTGCATCACTATTCGGCGTTGTTCGACGCGTTAGGAGACGGTTTACATGAAGAAAGTTTGAAGAGGCACACGGTGGAGCGACAAGTGTTTGGAGCAGAGATACGGAATATCGTGGCGGTTGGAGGACCGAAAAGGACGGGAGAAGTGAAGGTGGAGAAATGGGGGGAGGAGATGAGGAAAGTTGGGTTGGAGAGAGTGAGTTTGGAAGGGAGTCCGGCTGCGCAGGCGAATTTGCTGTTGGGTATGTTTCCATGGAAAGGTTATACGCTGGTTGAAGAAAATGGAAGTTTGAAGTTGGGATGGAAGGATTTGCCGTTGCTGACTGCGTCTGCATGGCAATTTGAAGGCGGTTGTGATGGTGGTGTCACCAATGATTTTAATGTTTGATAAGTGATATTTGTTTTTTGTTTTAGATGCGTACTAAAAATAGTTTTAGTTTTGGCATTTTGGAAAGGTGAGTACGATGATGAACTGATCAATGGGTATGATGTAGTTTTGAATCGTATTTCTCTCCGTATGGTATCTGAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010936712.1	2.2e-157	scarecrow-like protein 23
Swissprot	Q9M384.1	7.0e-124	Protein SHOOT GRAVITROPISM 1
trEMBL	A0A8K0IDS2	8.5e-159	Scarecrow-like protein 23

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G41920.1	62.32	2e-133	472		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G00294	AT5G41920.1	406	137	7	18	415	3	400	62.32	2e-133	472
AfisC3G00294	AT3G54220.1	359	137	3	56	414	296	649	60.45	2e-124	442
AfisC3G00294	AT1G63100.1	389	236	9	50	419	274	658	33.42	2e-47	187

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	52	415	346.5	1.5e-103

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008356	P	asymmetric cell division
GO:0009536	C	plastid
GO:0009630	P	gravitropism
GO:0009651	P	response to salt stress
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009956	P	radial pattern formation
GO:0010029	P	regulation of seed germination
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0044702	P	single organism reproductive process
GO:0048364	P	root development
GO:0048366	P	leaf development
GO:0048519	P	negative regulation of biological process
GO:0051457	P	maintenance of protein location in nucleus
GO:0090610	P	bundle sheath cell fate specification

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network