result

Gene information

Detail information of AfisC3G00301

Location

Gene	Chr	Start	End	Strand
AfisC3G00301	chr3	51496315	51498334	+

Sequences

CDS

>AfisC3G00301
ATGAGCCTTCCTCTCTCCGAATCTGATACTATAAATTTTGATGAGATTATAAACCATGATATGGCTATTAGAAGGTTCTGTCCCGAACGAATGGATCAAGAGCCTGAATGGATCGATAGCTTGATTGATTTTGATGCAATGATCACTTCTTCCCACGATTTTCTCGATGAAGACTTGAGCTTCATCGACAGCATCATCAACACAAGCTTATGTCAAGAAGAAGTAGGAGATAATAATGGATATGAAATTAGAAACTACATAGAAGATACACCATCTCCTGCTAATTCATTGGTGGATAAAGGACTAGAGCTAGTTCACTTGCTTCTGGCATGCGCCGAGGCAGTTGGATGTCGAGATACTAATCTTGCTTCATCTACACTTAGCCAAATTTGGCCATTGGCAAACCCAAATGGTGACTCTTTACAAAGAGTTTCATATTACTTCGCACTGGGTCTGAGTTCAAGGCTCTCTCTTTTGCAGAACATTGGTGCTAGTGGCTGTTTGGTCAATGGTAGTATTCTCAAGAATAACAATAGTTGTTGCACTTCTGCTACCAAAGATGAGAAAATGGATGCATTTCATCATCTCTATCTAACAACTCCATACATTTGTTTCGGGTTCATGGTGGCAAACGATGCTATCTTTCAAGCAGCTAAAGGCAAAAACCTTTTGCACATTGTCGATCTCGGATTGTCCCACACCCTTCAATGGCCTAGTCTAATCCAAGCCCTTTCTTCTCGCCCAGAAGGCCCACCGCACGTCAGGATTACCGGAATACCCTCCTCCATTGCAAACATCTCCGAAATCAACTCCAACATGCAGTGCTTAATAGAGGAGGCATTAACAGTCAACATGCATGTACAATTTCACATGGCAACCGAGCCATTCACTTCAGAATCACTCAACATAAGAAAAGAAGAAACTTTGTTCTTCAATAGCATACTCCACCTACATAAATACGTGAAGGAGAGTCGAGGCTCTCTTAAGTCCATCCTTATAGCAATCAAGAAACTAAAGCCTAAGCTATTTACGGTAGTAGAACAAGATGCAAACCACAATGGGCCATTTTTCCTAGCAAGGTTTCTAGAATCAGTACATTACTACTCGGCCATGTTTGATTCGATAGAAGCTAGTTTGCCTAGGCCTAGCGTGAAGAGAATGATGATAGAGAAGTGCTATCTAGGCAACGAGATTAAGAACATTGTGGCATGTGAAGGTGAAGAGAGAGTTGAAAGGCATGAAAGAGCAGATCAATGGAGAAGGCACCTTGGTAGAGCAGGGTTTCAAGGTGTTTCGATTGATTCAATGGATAGAGTGAAGATGTTGGCTTCTAACTATGGATGTGATGGTTATACAGTAGGAGGCGAAAAGGGGTGTTTGTCACTAGGGTGGAAAGGGAAAAGTATCATTTGGGCGTCGGCTTGGCAAGTGAATTTGAGTTCTAGTTCTTGA

Protein

Gene

>AfisC3G00301
TGCATGAATACAAAAATCTAGTGTCTCAAGCATAAAAGCATTCAAAAGGGAGTATTAATTACAATGTATAATTTGTCTGTTACGGTAAGTGTGTACTTTTCACTTGTATTACTATACAGACTGCAATGTGCATATAGAATTCTGCTAGGGATTGTTCTGTTTGTATTGTAAAAACAAGATGAAAGTATAGTACAAAAGCTAACCTTGCAAGCATACATAATATATTACCATCAATCTATCATTAAAATATAAAAGAATGCGTTATATATAATACCATTTCGTGACATCATGAAAACTGTCTGTAACCAAGGCAGCACACTCATGTTCTCGTGCATCGAACTAAAATTCTGATTCAAGCACCTGGAGAGTTAGTAGATGATAGAATTGTACAAGAGTGTGTCTATAAGACTAACGATGCTACATAAGACAATTTAGTCAAATTAGTTTAAAAAAGGCAATAATATATTGCTTTGTTTAATGAATTATGCGAATGCAAGCATATAAATATCAACTTGGCAGTTGCAACTTCTACATAGAAATATTAAATTTCCAACCAATATAGAAGAAAATGAGCCTTCCTCTCTCCGAATCTGATACTATAAATTTTGATGAGATTATAAACCATGATATGGCTATTAGAAGGTTCTGTCCCGAACGAATGGATCAAGAGCCTGAATGGATCGATAGCTTGATTGATTTTGATGCAATGATCACTTCTTCCCACGATTTTCTCGATGAAGACTTGAGCTTCATCGACAGCATCATCAACACAAGCTTATGTCAAGAAGAAGTAGGAGATAATAATGGATATGAAATTAGAAACTACATAGAAGATACACCATCTCCTGCTAATTCATTGGTGGATAAAGGACTAGAGCTAGTTCACTTGCTTCTGGCATGCGCCGAGGCAGTTGGATGTCGAGATACTAATCTTGCTTCATCTACACTTAGCCAAATTTGGCCATTGGCAAACCCAAATGGTGACTCTTTACAAAGAGTTTCATATTACTTCGCACTGGGTCTGAGTTCAAGGCTCTCTCTTTTGCAGAACATTGGTGCTAGTGGCTGTTTGGTCAATGGTAGTATTCTCAAGAATAACAATAGTTGTTGCACTTCTGCTACCAAAGATGAGAAAATGGATGCATTTCATCATCTCTATCTAACAACTCCATACATTTGTTTCGGGTTCATGGTGGCAAACGATGCTATCTTTCAAGCAGCTAAAGGCAAAAACCTTTTGCACATTGTCGATCTCGGATTGTCCCACACCCTTCAATGGCCTAGTCTAATCCAAGCCCTTTCTTCTCGCCCAGAAGGCCCACCGCACGTCAGGATTACCGGAATACCCTCCTCCATTGCAAACATCTCCGAAATCAACTCCAACATGCAGTGCTTAATAGAGGAGGCATTAACAGTCAACATGCATGTACAATTTCACATGGCAACCGAGCCATTCACTTCAGAATCACTCAACATAAGAAAAGAAGAAACTTTGTTCTTCAATAGCATACTCCACCTACATAAATACGTGAAGGAGAGTCGAGGCTCTCTTAAGTCCATCCTTATAGCAATCAAGAAACTAAAGCCTAAGCTATTTACGGTAGTAGAACAAGATGCAAACCACAATGGGCCATTTTTCCTAGCAAGGTTTCTAGAATCAGTACATTACTACTCGGCCATGTTTGATTCGATAGAAGCTAGTTTGCCTAGGCCTAGCGTGAAGAGAATGATGATAGAGAAGTGCTATCTAGGCAACGAGATTAAGAACATTGTGGCATGTGAAGGTGAAGAGAGAGTTGAAAGGCATGAAAGAGCAGATCAATGGAGAAGGCACCTTGGTAGAGCAGGGTTTCAAGGTGTTTCGATTGATTCAATGGATAGAGTGAAGATGTTGGCTTCTAACTATGGATGTGATGGTTATACAGTAGGAGGCGAAAAGGGGTGTTTGTCACTAGGGTGGAAAGGGAAAAGTATCATTTGGGCGTCGGCTTGGCAAGTGAATTTGAGTTCTAGTTCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK74830.1	7.0e-168	uncharacterized protein A4U43_C03F10570
Swissprot	A0A1B1WAJ0.1	1.2e-82	Protein REQUIRED FOR ARBUSCULE DEVELOPMENT 1
trEMBL	A0A5P1FE38	5.0e-168	GRAS domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G66350.1	39.22	9e-73	271	RGL;RGL1	RGA-like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G00301	AT1G66350.1	408	209	11	84	478	127	508	39.22	9e-73	271
AfisC3G00301	AT3G03450.1	388	216	10	99	477	175	546	37.89	2e-67	253
AfisC3G00301	AT5G17490.1	390	207	10	99	477	152	517	37.95	4e-66	249

Ortholog group

Species	Genes
Allium cepa	g187136.t1
Allium fistulosum	AfisC3G00301
Allium sativum	Asa2G00446.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	104	476	348.3	4.2e-104

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009863	P	salicylic acid mediated signaling pathway
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009938	P	negative regulation of gibberellic acid mediated signaling pathway
GO:0010029	P	regulation of seed germination
GO:0042538	P	hyperosmotic salinity response
GO:0044702	P	single organism reproductive process
GO:0044763	P	single-organism cellular process
GO:0048608	P	reproductive structure development
GO:0060255	P	regulation of macromolecule metabolic process
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0080090	P	regulation of primary metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network