result

Gene information

Detail information of AfisC3G00450

Location

Gene	Chr	Start	End	Strand
AfisC3G00450	chr3	75218538	75219593	-

Sequences

CDS

Protein

Gene

>AfisC3G00450
ATGACAGCAATTAAAGAGACTGAAAGAGAGGTGGAGTTGATGAACATTTCGAACTCCTCTGTTAATCTGGGAACGTATTCTATTGATTATGCCAAATGGGTTGCTGAAGCATTATCAGAAGATCAAGTCCTTGCTCTCCCTAATTCAGACCAAAAAGAAATTCGTCTTCACAATGAAATGGCATGTAGTCAACCGCCAAGCAAATATGACCGAAAGTCGAAGAGAAAGAATAGGGGCGATAAGGTACAAAAGAGAAGGTATATTTACATACATTATTTATATATACATAACAGTTCATTTCTTCTAATTTTGATGTTTGTGCTTTTCTATGTAAGACATGGCGAGCTAAATACTTATGTATGTTATAATATGAAAAATTAACAGAAAACTTGGGAGTTCGAAGGCCATAATTACACCGGCGCCACATAATGATGGTCATCAATGGAGAAAATATGGTCAGAAGGATATTTCTAATTCTAAACATCCAAGGTAAATATTATTAGCTTTATTTCATTGCTTCAGTTTTATGAAATTTGTCAATATTTGTAGATATATAATGCATTAAATAATGTGTACTTATAACAAATACAATCTTATAGGACATACTACAGATGCACACATAAAGAAGATCAGGGTTGCCTTGCAAGAAAGCAAGTCCAGCTGCAAAACAAGATGTCGAGCTGTGACTGTGATGATTCTCCAATGTTCCAAGTCATTTATGAGAACGAGCATTCCTGCACTTCAACAAGAAATGATGATCAATACATCTTTCCTTTTACCAGTGACACTGATAAAGATAATGATCAATCTAACTTCTTTTTATTTGATACTACTGAGAGATCAGCATACCTGAATAATGACCATGCTTTAAATCATAAAAAGGTGGAATCATTAGATGAATTGACGTTCAAAGTGAAGATTGAAGAGGACATTGTTGACGGTGGTTACTTAGGCGAGGTGATCGATTTTACTATGAGCCGTCCATTACTTCCTATTTATGATATTGGATCTGATTGCTATCATGGCATAGATTGTATTTTGAGCACAGTACTGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244498.1	2.4e-24	probable WRKY transcription factor 46
Swissprot	Q9SKD9.1	7.8e-12	WRKY DNA-binding protein 46
trEMBL	A0A2I0BGR4	5.4e-18	Putative WRKY transcription factor 54

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G40750.1	42.48	5e-17	84.7	ATWRKY54;WRKY54	WRKY DNA-binding protein 54

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G00450	AT2G40750.1	113	54	2	72	180	119	224	42.48	5e-17	84.7
AfisC3G00450	AT2G40740.1	132	77	3	36	167	111	232	34.09	1e-15	80.5
AfisC3G00450	AT4G23810.1	93	38	3	84	168	133	218	43.01	1e-14	77.4

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	101	167	83.0	1.2e-23

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0005730	C	nucleolus
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0048527	P	lateral root development
GO:1901141	P	regulation of lignin biosynthetic process
GO:1904369	P	positive regulation of sclerenchyma cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network