result

Gene information

Detail information of AfisC3G00509

Location

Gene	Chr	Start	End	Strand
AfisC3G00509	chr3	89621197	89622454	+

Sequences

CDS

Protein

Gene

>AfisC3G00509
TGCTTTCAATTATATAAATAACTGTGTTCCACCTTCATCTTCATTCCACTTTAGACCTAGTTCCTCCTTTTCATTTGGTCCTTTTGTGTGTTCAATATAGCTAAACATTAAGTACAATACTGTTATGGAGCTCTCTCATATGTTGTACTAAAATATTTATTTCCATCTCCATATTTCTTCTTAAACTAGTTCTTTCTTAGTCCCTTTTCTTGTATCTTCAAACATGTCTACTTCAAAACCCTAACTTTTTTCTTCTAATTTTCACTGCTAAACCATCATGTTTACTTCATACAACACCAATGACCCATATTTTTACCAAGCCACAAATTCTTACCATGATGACATCTTCACAAATGAACTCTTCAATAGACTTAAAGAACAACAAAATCACCAAACCAAAATCATAGATCCATCGACTAACTTTGATAATGCAAGCTCAAACCGAAAGAAAGCAATGACAAGAAAAGACCGTCATAGCAAGATAGTCACTGCACAAGGGCCTAGAGATCGAAGAATGCGCTTAAACCTTCAAGTCGCTTCACAATTCTTCACCATTCAAGACATGCTTGGCTATGACAAGGCAAGCAAAACTATAACATGGCTCATGAAGGAAGCAAACTCCTCTATCGAAAAGCTTAAAGCTGCCTCCAAACTGAAAGGAAACCACCAGAGCTTCAGCGATAGTAACAAAAGCGACAATAACGATGAGCCCATTTCAGAACTAATGGAATGTGAGTCTTCCTTCGCCACTCAGCAAGAGAAAGAAGTTGCAAAAAAAACAAAGAAAAAATTTAAATCTACGAGTAGAAGAAATGCAACGCCGACACCACTTACGAAAGAATCTAGGGCCATGGCAAGGGAAAGAGCAAGGGAAAGAACTAAAGAGAAGAAGGATATTAGTAACATACTGCTTAATACCTTTATTCCAGTTTTAGACGGAGAATCAGGTTGCCATAATCTTGTTTCTAATAATATTGAAGAACAATGCTCACTTTTTTCTGCAAATTACAGTAATGGACAAATATTTGATCAGGATCAGCTTTCAGCTGGTATTTTGAATTATAACATGGAAGGATCTTATTTGCAACCTGAACAATGGATGAATGGGTTTTCGAACTATGGGGATGAGCAAATGCAAGAAGGAATGTGGTAAGTGTAGGAAGAACTTAACAAGTAAGTGTTGGCTTGTAAATTTTCTAGTAAAAATCGTGTCATATTTTATGAATTATCCATCTTTGATTTGTAAAAAAATAAGCAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020258510.1	2.6e-22	transcription factor TCP12-like, partial
Swissprot	A0AQW4.1	7.1e-17	Protein BRANCHED 2
trEMBL	A0A5P1F9Z5	1.9e-22	TCP domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G67260.2	32.70	3e-21	99.0	TCP1	TCP family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G00509	AT1G67260.2	211	108	5	20	203	29	232	32.70	3e-21	99.0
AfisC3G00509	AT1G67260.1	211	108	5	20	203	29	232	32.70	3e-21	98.6
AfisC3G00509	AT1G68800.1	75	27	1	57	128	107	181	60.00	3e-21	98.6

Ortholog group

Species	Genes
Allium cepa	g228106.t1
Allium fistulosum	AfisC3G00509
Allium sativum	Asa2G00245.1
Arabidopsis thaliana	AT1G68800.1
Oryza sativa	LOC_Os03g49880.1; LOC_Os08g33530.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03634.10	TCP	Family	61	205	130.9	5.4e-38

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005739	C	mitochondrion
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008285	P	negative regulation of cell proliferation
GO:0009637	P	response to blue light
GO:0009733	P	response to auxin
GO:0009793	P	embryo development ending in seed dormancy
GO:0009908	P	flower development
GO:0009965	P	leaf morphogenesis
GO:0030154	P	cell differentiation
GO:0045962	P	positive regulation of development, heterochronic
GO:0048262	P	determination of dorsal/ventral asymmetry
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000032	P	regulation of secondary shoot formation
GO:2000306	P	positive regulation of photomorphogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network