result

Gene information

Detail information of AfisC3G00514

Location

Gene	Chr	Start	End	Strand
AfisC3G00514	chr3	91745531	91748024	+

Sequences

CDS

>AfisC3G00514
ATGAAGCGGGAGCATGCAGAAAGCAGCAGCGGCCCACCGCCACCGTTGAAGAACGGAAAGTTCAAGATGATTGAAGAGGAACCCGACGCCGGCGTCGACGAACTCCTCGCCGCTTTGGGCTACAAAGTCCGCAACACTGACATGGCCGACGTAGCGCAGAAGCTCGAGCAGCTCGACATGGTTATGGGAACCACTGCCGCCTGCAACGACGACGCCATCATCACCAATCACTACAACCCCTCCGATCTGTCCACCTGGCTCGAATCCATGCTTTCCGAGCTCAACGCCCCCCCTCCTCCTCTCCCAAATTCAAACCCTAATAACGGCACTTTCTCCTCTTCCAATGTCAATCCCTTTGATTTTCAGTTCCGTACTAATCATATTCCCAATACCATCATTACCGAAACTACCCCTACTCAAACCTCAGATCTCAGATCGGATCTGACCCGATCGAGCCCAGACCGCAAAAGACCAAGAACGCTGATGGCGTCATCATCGTCATCCATCGCCGAACCTTCTTCTTCCTCATCTCTCCCCGTCGTTGTCGTAGATTCACAAGAAGCCGGAATCCGTCTAGTCCACACTTTAATGGCGTGCGCAGAAGCAGTACAGCAAGAAAACTTCAAAGCCGCTGACACCCTAGTAAAGCAAATTAACATCCTATCTTCAAGCCAAGGCGGTGCCATGAGGAAAGTAGCAGGCTGCTTCGCAGAGGCACTCGCTAGAAGAATCTACAGACTACACCACCAGCAAGACTGCTCCTTAGAATCCGCCTTCTCCGACATCCTCCAAATGCATTTCTACGAGAGCTGCCCTTATCTAAAATTCGCTCACTTCACCGCCAACCAAGCCATTCTAGAAGCCTTCGAAGGGTGCAGAAGGGTCCACGTCATCGATTTTGGCATGAAGCAGGGCATGCAGTGGCCGGCTCTGTTGCAGGCCCTCGCTATCAGACCCGGCGGCCCGCCTTCTTTCAGACTCACCGGTATTGGCCCACCCCAGCCTGATAACACCGACGCTTTACAGCAGGTCGGGCTCAAGCTGGCCCAGTTTGCCGAGAAAATTCAAGTCGATTTTGAATACAGAGGTTTTGTTGCTAATAGCTTGGCCGATTTGGAGCCTTTCATTTTAGAATGGATTCCGAAAACGGATAACGAGTTAGTTGAAGAGGTTGTAGCTGTAAACTCCGTTTTCGAGTTGCATAAGTTGTTAGCAAAGCATGGGGCAATCGAGAAAGTGCTGAGAACGATAAGGGCGGTTAAGCCAAAGATCGTAACGGTGGTGGAGCAAGAGGCGAACCACAACTCCGTTATATTTACGGAACGGTTCAACGAGGCGTTGCACTACTACTCGACGATGTTCGATTCGTTGGAAGGCGGGTGTGGGCCGGACGGGTCAGGTCCGCAGGACCAGATGATGACGGAGATGTATTTAGGCCGGCAGATATGCAACGTTGTGGCCTGCGAAGGGGCGGAGAGGACGGAGCGGCACGAGCCGCTGGAGCAGTGGAAGGGCCGGTTCGGGTGGGCCGGTTTTGAGCCGGTCCATTTGGGGTCCAATGCGTTCAAGCAGGCGAGTATGCTGTTGAGTCTGTTTGCGGGTGGGGAAGGGTACGTGGTGGACGAGAAGGACGGGTGCCTTACGCTAGGATGGCATTCTAGGCCGTTGATTGCCACGTCAGCGTGGAGGGTGGCTGAGGTGGTGTAA

Protein

Gene

>AfisC3G00514
AAAAAAAAAAAAAAATACTACTGCTATTTTAATGTTAGCAAGGATAGATACCTCCCTATGATTAATTGATGCTCTCATCTCTCATTCCTCATTCATTTCTCTCCTCCCAACCTCAAAACAAAGAAAAACCTCCATAACCAAAAAAACTAAAAAGCAAATAGCAACCATTTTAAGATGAAGCGGGAGCATGCAGAAAGCAGCAGCGGCCCACCGCCACCGTTGAAGAACGGAAAGTTCAAGATGATTGAAGAGGAACCCGACGCCGGCGTCGACGAACTCCTCGCCGCTTTGGGCTACAAAGTCCGCAACACTGACATGGCCGACGTAGCGCAGAAGCTCGAGCAGCTCGACATGGTTATGGGAACCACTGCCGCCTGCAACGACGACGCCATCATCACCAATCACTACAACCCCTCCGATCTGTCCACCTGGCTCGAATCCATGCTTTCCGAGCTCAACGCCCCCCCTCCTCCTCTCCCAAATTCAAACCCTAATAACGGCACTTTCTCCTCTTCCAATGTCAATCCCTTTGATTTTCAGTTCCGTACTAATCATATTCCCAATACCATCATTACCGAAACTACCCCTACTCAAACCTCAGATCTCAGATCGGATCTGACCCGATCGAGCCCAGACCGCAAAAGACCAAGAACGCTGATGGCGTCATCATCGTCATCCATCGCCGAACCTTCTTCTTCCTCATCTCTCCCCGTCGTTGTCGTAGATTCACAAGAAGCCGGAATCCGTCTAGTCCACACTTTAATGGCGTGCGCAGAAGCAGTACAGCAAGAAAACTTCAAAGCCGCTGACACCCTAGTAAAGCAAATTAACATCCTATCTTCAAGCCAAGGCGGTGCCATGAGGAAAGTAGCAGGCTGCTTCGCAGAGGCACTCGCTAGAAGAATCTACAGACTACACCACCAGCAAGACTGCTCCTTAGAATCCGCCTTCTCCGACATCCTCCAAATGCATTTCTACGAGAGCTGCCCTTATCTAAAATTCGCTCACTTCACCGCCAACCAAGCCATTCTAGAAGCCTTCGAAGGGTGCAGAAGGGTCCACGTCATCGATTTTGGCATGAAGCAGGGCATGCAGTGGCCGGCTCTGTTGCAGGCCCTCGCTATCAGACCCGGCGGCCCGCCTTCTTTCAGACTCACCGGTATTGGCCCACCCCAGCCTGATAACACCGACGCTTTACAGCAGGTCGGGCTCAAGCTGGCCCAGTTTGCCGAGAAAATTCAAGTCGATTTTGAATACAGAGGTTTTGTTGCTAATAGCTTGGCCGATTTGGAGCCTTTCATTTTAGAATGGATTCCGAAAACGGATAACGAGTTAGTTGAAGAGGTTGTAGCTGTAAACTCCGTTTTCGAGTTGCATAAGTTGTTAGCAAAGCATGGGGCAATCGAGAAAGTGCTGAGAACGATAAGGGCGGTTAAGCCAAAGATCGTAACGGTGGTGGAGCAAGAGGCGAACCACAACTCCGTTATATTTACGGAACGGTTCAACGAGGCGTTGCACTACTACTCGACGATGTTCGATTCGTTGGAAGGCGGGTGTGGGCCGGACGGGTCAGGTCCGCAGGACCAGATGATGACGGAGATGTATTTAGGCCGGCAGATATGCAACGTTGTGGCCTGCGAAGGGGCGGAGAGGACGGAGCGGCACGAGCCGCTGGAGCAGTGGAAGGGCCGGTTCGGGTGGGCCGGTTTTGAGCCGGTCCATTTGGGGTCCAATGCGTTCAAGCAGGCGAGTATGCTGTTGAGTCTGTTTGCGGGTGGGGAAGGGTACGTGGTGGACGAGAAGGACGGGTGCCTTACGCTAGGATGGCATTCTAGGCCGTTGATTGCCACGTCAGCGTGGAGGGTGGCTGAGGTGGTGTAATTGTTTAGTTTTTATTTATTTATGACGAGTAGTAGTATCTTTTCTATGTGGATTAAGTTTGCGAGGGCCTCTTTTGGGGGGTGAAAACGCTGTGGGCGTGTTAGTGTAATTAGGTATGTAGGGGAGGGCTTATATGAATAAGGGCAAAGAGGTCATTTTTGGGATTAAAAAAAAGTAGTTTTTGCTGTTTTTATTTTTATTGCTGTGGACTGCTATCGTTTTTATTTTTTTATCACTGTTTGTGCACAGCAGAGGAATCTGGTGCAGTGTACGGGTATTTCCTGTTTGGTGTAGGGGGCGCTGGCATGGCTTCTTTTACCTTTCTTTTCTTGCGTTTCTATTCTAATCATTGTAGGTCAAAAAATAATTGTTAATGTTTCGACACTGTGAAAACTCTCACTGCTACTGCTAACACTCGACTGTGAGAATGCATTCATGTACATTTTTACTATTTAGTTTGATGCGTTGGGAAGGTGAGATATTAACCTTTTTAAATGTTTGTAAAAGATTGCTTTATGTCAAATTAGTTAGTTTGTTCAATTCTATTATAAACTCAATTAACATATTTATCTTCTTTAGGGCCTAAGCAATCAATACAAAAGTTAACATTTTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020584529.1	1.1e-199	DELLA protein SLR1-like
Swissprot	Q9ST59.1	7.0e-180	Reduced height protein 1
trEMBL	A0A6I9QX92	5.5e-198	DELLA protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G14920.1	57.94	9e-175	610	GAI;RGA2	GRAS family transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G00514	AT1G14920.1	554	195	10	17	565	11	531	57.94	9e-175	610
AfisC3G00514	AT2G01570.1	571	212	11	20	565	28	583	55.87	1e-173	607
AfisC3G00514	AT3G03450.1	585	210	14	1	565	1	547	54.19	7e-170	594

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12041.5	DELLA	Domain	33	98	94.9	1.8e-27
PF03514.11	GRAS	Family	192	563	451.4	2.1e-135

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006808	P	regulation of nitrogen utilization
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009863	P	salicylic acid mediated signaling pathway
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009938	P	negative regulation of gibberellic acid mediated signaling pathway
GO:0010187	P	negative regulation of seed germination
GO:0010218	P	response to far red light
GO:0010233	P	phloem transport
GO:0044212	F	transcription regulatory region DNA binding
GO:0033206	P	meiotic cytokinesis
GO:0042176	P	regulation of protein catabolic process
GO:0042538	P	hyperosmotic salinity response
GO:0043565	F	sequence-specific DNA binding
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:2000033	P	regulation of seed dormancy process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network