result

Gene information

Detail information of AfisC3G00531

Location

Gene	Chr	Start	End	Strand
AfisC3G00531	chr3	94135948	94137168	+

Sequences

CDS

Protein

Gene

>AfisC3G00531
GAATTGCTATCTATGCTGTCGCTTCTGCCGTTGTTTCTTCCTTGGCCTGTAGAGTTTTTGGAATTGCTTGTTTTTGCATCGCTCAGCTTTGAGCTTGGTATTGCTGGTGGCTGATTCTTTCCATTGTTATTTACAGCGTTTTTCTTTGTTGCTGCTTCTGAACATTGAGGAGGATGTTTAGAGATCAGGTGTGCGTTAAGGTTTTCTTTAGCCTCTGATTTTTCGTTCTCTGATGAAGTCTTCTCTGATGCAGTCTCTGACATTTTATGTGCATTAGAAACTCAATGTATAACCGATCAAAGACACCTAGGCTAAGGTGGACTCCGGATCTTCATCTTTGCTTTGTACATGCAGTTGAGAGACTCGATGATCAAGAAAGTGAGTCAAACTTCAAATTTTAGAATATGGACTCGCTTCTTCTTCATTAGTTTTGAATATATAAAAATATTTTTCTATATAATATCTTGTGGACTTATCATAATTTGATTGCAGGAGCAACTCCAAAGCTAGTTTTACAGATGATGAATGTTAAAGGACTTAGTATTGCTCATGTCAAGAGTCACTTACAGGTAATTACTAATTAAAAAATGTCTCTACAGTATATAGTTAACTATGTTGCCTAATTGGTTAACTGACTTTCTTTCTCATTCCTTTTTGCTTAACCGATAGATGTATAGAAGTAAAAAGATTGATGATTCTGGTCAAGGTACTTGTATATTTGTATAATTTTCCATATCAAGTAATATTGCAGTAAAATTGGATATATATATATATATATTAATGTATTATATGCTTAACTCAGTTATCGGTGAACAAGCAAATGAGATCCAAGGAAAAGAGCAGTACATTAGCAGTCTAAGTCACTTTCCAATGCTACATGGAAGACCCTTTGCCACTTCAAGGTTCTTATATAGTTAATTTTTAAGTATATATGATTGATAATTACATCTCATAATCAATGATTATATGATTTGGATGTTTGGCTAATTAGATAAGGTGCATCCTCTTGGAGCAGTCATGGATACTGGGTGCACAATAGATGCCTTTTCACAATTTTTGAACAAATTAATGGTGAAAATCAATCATTACCTATTCATACCATAACATGTGAACAGCCGATACTAATTTTTGTTTGAATAATTGTGTGATACTTTTGATTTTTAGTATATTGTGCATTACCTTATTCTGTTATTGCAACTGTTGTTTTGTTCCTTTCTTCCC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252075.1	1.2e-38	probable transcription factor KAN2
Swissprot	Q700D9.2	2.2e-18	Putative Myb family transcription factor At1g14600
trEMBL	A0A5P1FK71	8.3e-39	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G38300.1	68.75	2e-31	130		myb-like HTH transcriptional regulator family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G00531	AT2G38300.1	96	29	1	2	96	49	144	68.75	2e-31	130
AfisC3G00531	AT2G40260.1	93	29	1	2	94	77	167	66.67	7e-31	128
AfisC3G00531	AT2G42660.1	68	17	0	2	69	45	112	75.00	1e-24	108

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	9	60	35.8	6e-09

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000719	P	photoreactive repair
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003904	F	deoxyribodipyrimidine photo-lyase activity
GO:0005618	C	cell wall
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0009536	C	plastid
GO:0009650	P	UV protection
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009956	P	radial pattern formation
GO:0010051	P	xylem and phloem pattern formation
GO:0010158	P	abaxial cell fate specification
GO:0010229	P	inflorescence development
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0055063	P	sulfate ion homeostasis
GO:0071486	P	cellular response to high light intensity
GO:0080060	P	integument development
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network