result

Gene information

Detail information of AfisC3G00629

Location

Gene	Chr	Start	End	Strand
AfisC3G00629	chr3	110355011	110356472	+

Sequences

CDS

Protein

Gene

>AfisC3G00629
ATGGGTTTCGGCTACGGGGCAAAAATCAAGACCTACATCGGGTCTACAGGGCGGTCTGAGGTAGGGTTTAAAAAACCCGGGATGGGAATGAGGCATAAAAACCCGCCCCAACCCATCCCATTGCCATCCCTAAACACCACCGCACTTGATCCTAAGATGAATTTGAAGCCCTCGACCACACGTTCAACGAATCAAACGATGTTGATTTTCATGCATCCTAACTCTAAAAACAATTTCGTGTAGTTAGTAGCTATGTTTATTTTTGTTACAGCCAAAAGAAAAGAGAGAAGGAGGAGAAGTGATGGAGAGGAAGTGAAGGGGTATGATGTTTATTTATAATAAAATAAATATTATATTCAATTTCTCAAATTAAATCGCTACATATTTCGAGCTCGCATGATCACATAGTATATCCAATCGCCACGAAACTCGTCGGTATACATCGTCTCATTACTCTGGTCTGAATGGCACTAGTTTCATCAAAATCCGAGATAGTGCCCCAAGATGATAATTTCATGTGTTTCGAGACTGCTTGTCGAACGATTTTTTATCATATTATCGATATTTATTTGAACTATTAATTTTTGTAAATAAATTTCGACAACAAATTACTTATCATTAGTTATTATTTAAAAAGGGAGCTAACAAGGTTAGTAAATCCAATATTCAAATATTTAAATAATTCATATATTTAAATAAGAATTGTTCAAAATTGCGGGTTGTTACAATAAGAATATCATATTACTCCTAGTGGGGCGGGCATTTTGCCCCCTTGTTCTTTTGAACTGAATGAAATAGATCTTTAGTTGCAAACTCTTGAGAAATTTGTTGTGTTGCTTGATCATCTATGCAACATGTTGAGTGGAATACACTACAACATAAGAGCTATTTTGTAACACTTATTTTGTTTAATTGCTAACACCTATTAGTGTTGCATGTCAGTTAATATGCCATTACTATGCAGAAAATGCGTGAGGGAAAATAATATTTAAATTCTTTTGTTTTGCTAACATATTTTTAGTGTTGGAAAATGAAGTTAAGATGAAATTAATTGAAATGTTCTTAGTCAATAAGGTAAATGAGTATCCTTACTCATTTAGTTGTAGAAAATCCTCCAAAAAAAACCTAGATCTCAAATTAAATATCTATGGTGTAGTCTAATGAGCGAGTTAAAGGAAAAGTAAAATGGTTCAACCGCACGAAAGGCTTCAGCTTTGTAACTCCTAATGATTGTAGTGGCGATCTTTTTGTCCATTGGTCTTCCATCAAATCCGATGACGGCTGCTCTCTCACTGAAGGGGAAGCCGTAGGGTTCTCTATATCTGAAGGAGACGATGCACACACTAAAGCCATTGATGTCACCAGACTAGATGGTGCATCTATCCAAGGGGACGGAAACAGCTGCAGTGACCATGGTTATGATGGAGACAATAGCTTCCAAAATTTCAATCCTAATCGATAG

Functional annotation

Database	accession number	e-value	annotation
nr	KMZ65266.1	4.0e-19	Cold shock domain-containing protein 4
Swissprot	O65639.1	1.1e-13	Cold shock domain-containing protein 1
trEMBL	A0A0K9P8C9	2.8e-19	Cold shock domain-containing protein 4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36020.1	50.60	3e-16	80.5	AtCSP1;CSDP1;CSP1	cold shock domain protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G00629	AT4G36020.1	83	41	20	102	6	88	50.60	3e-16	80.5
AfisC3G00629	AT2G21060.1	77	40	23	99	13	89	48.05	1e-13	71.6
AfisC3G00629	AT2G17870.1	83	42	20	102	6	88	49.40	1e-13	71.2

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00313.19	CSD	Domain	26	90	67.6	5.5e-19

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001072	F	transcription antitermination factor activity, RNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003697	F	single-stranded DNA binding
GO:0003729	F	mRNA binding
GO:0005829	C	cytosol
GO:0008143	F	poly(A) binding
GO:0009414	P	response to water deprivation
GO:0009631	P	cold acclimation
GO:0009651	P	response to salt stress
GO:0010501	P	RNA secondary structure unwinding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0031564	P	transcription antitermination
GO:0032508	P	DNA duplex unwinding
GO:0060567	P	negative regulation of DNA-templated transcription, termination

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network