result

Gene information

Detail information of AfisC3G00819

Location

Gene	Chr	Start	End	Strand
AfisC3G00819	chr3	148951985	148953273	-

Sequences

CDS

Protein

Gene

>AfisC3G00819
ATCACCACTCATTTGCATACGTCTGTTTTACAAAGGTAAAAGGTAAAGAAAAGGAAAGAAAAATAAATACAGACATGTCCACTCTTCTTCCAGTTATGAATTCAAAGGGAAAGAGATCAAAACGCTCTGGAGCACCTACAGAAGAAGAGTACCTTGCTCTATGCCTACTGATGCTTGCACGTGGAGAACATCACATCGATCAAAGTCTGCTTAAATTGGAATCAAGTGCAGCAGCAGTTAGAGAAGAGTACAAGTGTAAGGTGTGTGGGAAGGCATTTGGGTCATTTCAAGCACTCGGTGGACACAAGGCCAGCCATAGATCAATTAAGCAGCAACTGCTGCAGACTGCTGATCTCCATCAATCTCACTTGACTCTATCTGAATCCGAAACTATACCTGTAGCTATACCTGCTGTTTCTGGAAGTGGAAGGATGCACAAGTGTTTGATTTGCTTCAAAACGTTTGGGTCAGGGCAGGCCTTGGGTGGACATAAGAGGCGTCACTATGATGGAACTATTGGAAGTGCAGCCAAAAGTGGATTCTCTGCTTCTTCTGTAAGTGGCAGTTCCAGTAATACTAATGTTAATCATAATGTTAGTAGACGGTTTGGTTTTGATTTGAATTTGCCCGCCTTGCCCGAATTTGGATTTAGATTCAGTGGACTCGATGAGGAGGAAGTGCAAAGTCCTAGTCTTCCTTCTAAGAAGCTTAGATGCCTTACTATTCCAGCTTGATTAGATGGCTTACTTCCTACCTAGCTACTTTTGGTTCATGCATATTCATTTTTTCATTCTTCATAGATCATATTCATTTTTTCATTCTTCATAGATCACTGATTATTTTCAGTTTATTTCATTTAATTGTAATTACTGGTTTTGGTTAATTTGATTATAATTATAAATCATTCTTGTCTGAATAATTCATTTGCTTGGTAGAATAGAAGATGTCCAACAATATATTCCAGGGAATATTAAATAACTATGATTCTGATAACTTTACCATTATCAAACATCTTAACCCGTTACATTTTGAATATTATACCATGCTATCTATTGTAGTTGGTCCCAAGTTAAAACAAATATAACACTGGCTGAGCCAATTTTTACATTCCAGTTGGAACAATCATGATAGATAGGCGTTGGCATGTATGAACCCAAAAATGACAGTACATAGTGACATCTTTAATTTGAAAAGTGAAATCCAGACACAGTGGCTAAAAGCATTTCAAAAACTACTGATTTATTGATAAGAGTAGTGCTCCTAATTTTGATTCAGATGTTGAAATAAAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_021691695.1	3.0e-33	zinc finger protein ZAT10-like
Swissprot	O22533.1	4.3e-29	COLD INDUCED ZINC FINGER PROTEIN 2
trEMBL	A0A1S3ZR96	2.8e-33	zinc finger protein ZAT10-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G27730.1	43.60	2e-31	132	STZ;ZAT10	salt tolerance zinc finger

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G00819	AT1G27730.1	211	88	8	10	213	32	218	43.60	2e-31	132
AfisC3G00819	AT3G19580.2	203	92	6	22	216	66	258	45.81	3e-30	128
AfisC3G00819	AT3G19580.1	203	92	6	22	216	66	258	45.81	3e-30	128

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13912.3	zf-C2H2_6	Domain	59	83	46.6	1.9e-12
PF13912.3	zf-C2H2_6	Domain	121	145	36.3	3.4e-09

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001047	F	core promoter binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009416	P	response to light stimulus
GO:0009737	P	response to abscisic acid
GO:0009793	P	embryo development ending in seed dormancy
GO:0010200	P	response to chitin
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042538	P	hyperosmotic salinity response
GO:0043565	F	sequence-specific DNA binding
GO:0048235	P	pollen sperm cell differentiation
GO:0055062	P	phosphate ion homeostasis
GO:2000280	P	regulation of root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network