result

Gene information

Detail information of AfisC3G00828

Location

Gene	Chr	Start	End	Strand
AfisC3G00828	chr3	151411539	151416141	+

Sequences

CDS

>AfisC3G00828
ATGAAAACTTCTCTCCTTCCACTGCTCATCATTCTCCTCATCACCGGTAACCTCACCGCCGTCCTCTCCGACACCGACCCCGGCGATGCACTCGTCATGCACGACCTCTCTTCCTCCATAACTGGAATGAACTGGCCATCCAAGTCCGACCCATGCAACTGGGATCTAGTTACCTGCACGGACGGTCGTGTCACCGCAATCCAGCTTGGCAACAAATCCGTCGCCGGCACCCTCCCTGCCTCCCTCGGTAACCTCACTGCCCTCACCCGCCTCGAGCTCCAGTACAACGACCTCTCCGGCCCCCTACCTCCCCTCAATAAGCTCACCGCCCTACAATCCTTACTCCTGCACAACAACAAGTTCACCAAAGTCCCTGGAAACTTCTTCTCCGGCCTTTCAGGACTCCAGTCCGTTTACCTCGACAACAACCCCTTCGATCCATGGCCGATTCCTAGATCCTTAAACGAATGCGTTTCGTTAGTCAACTTCTCAGCCATTTCCACTAACGTCACTGGCGGAGTGCCGGATCTCTTCGGAGCTTTACCAAGTTTGACCCATTTAGCTTTATCTCTAAACTTCCTATCGGGTTCTATTCCAAACACTTTTTCCGGATCCAGCATCCGATCTCTATGGCTTAACAGTCAAAAGGGACCAATCATGAGTGGCAGTATTGAAGTAATAGGAAGCATGTCTGGTCTAGAAGAGCTTTGGCTACAAAACAATGCATTTTCAGGTCCATTACCGGATTTTACAAACTTAACCGATTTATACGATTTGCAGTTAAGAGACAACCAATTCACTGGCATTGTTCCAGAGAGCTTGAAGAGTTTAAAGACTCTTAAAAGACTCACTTTATCCAATAATTTCTTACAAGGGTCAGTTCCGGAGTTTAAAAACCCGATTAAAGAACTAGACATTGATGTTAAGTTGGAGAGCTTCTGTTTAAATAAAGTCGGAGATTGCGATCCTCGAGTGAATGCTTTGTTGCAAATAGTAAAAAGTTGGGGCTATCCGTTAAAATTCGCTATGAATTGGAAAGGGAATGACCCATGTAGTGGTTGGGTAGGAATCACTTGTGGCAGCGATGGAAATATAACTGTGGTTAATTTCCGGAAGATGGGACTGAACGGAACTGTTCCGGAAGAGTTCACCCTTCTTCCGAAAGTGCAAACGATTCTGCTTTCAGGTAACAATCTTATGGGCGTGGTACCAAAAAGCCTTTCGAGTATAACTTCTCTGAAAGAACTGGATTTATCAGACAATAACCTGTCTGGTGAAATTCCTGCCTTTGGCAAGAACGTGGTGGTGAAGACTGCTGGAAATCCGAACATCGGGAAAGACATAGTAACCCCGGACCCGAATTCCCACACGTTGCAAAATGGTACTGGTTTGGGTTCCGATGATAATGGTCACAAGTCAAAACCTGTTTCAACTGGGGTCATTGTGGGCTCCATTATCGCAGTGGTTTTTGGGATTTCCGTCATAGTCCTTTTAGGTTTGTTCGCGTACAAGAAGAAAAGGAAACATAATTCCTTTGGTCGTGTTCAAAGTCCGAATGGTAACAATATGATAGTGCATCCACGTCGTTCCGGGTCGGACCCGGATGCTTTGAAAATCACTATAAACGGAGGAGGAAGTACATCGTCATACAACACTAACATGATTGAAGCGGGCAACATGGTGATAGCTATTCAAGTGCTTCGAAATGTGACCAACAATTTTAGTGAAGAGAACATATTGGGCCGGGGCGGGTTCGGAACCGTTTACAAAGGGGAGCTCCACGATGGAACAAAGATAGCGGTGAAAAGAATGGAGTCGGGAGTGATAACTTCTAAAGGGTTGAACGAGTTCAAGTCCGAGATAGCAGTCTTAACTAAAGTCAGACATAGAAATTTAGTGTCTTTGCTTGGATATTGCTTAGATGGGAACGAAAGGCTTTTGGTTTATGAGTACATGCCGCAAGGGACTTTAAGTAGGCATTTGTTCGAGTGGGAGAAGGAAGGGTTGAGCCCTTTGGAATGGAAGCAAAGGTTGAGCATTGCTTTGGATGTGGCTAGAGGGGTCGAGTATTTGCATAGCTTGGCGCATCAAAGTTTTATACATAGAGATTTGAAGCCTAGTAATATATTGCTTGGGGATGATATGAAGGCGAAGGTGTCTGATTTTGGGCTGGTTAGGCTTGCACCGGAGGGCAAGGGGTCGATTGAGACTAGACTAGCTGGGACTTTTGGGTATCTTGCCCCTGAATATGCAGTGACTGGGCGCGTAACAACAAAAGCGGACGTATACAGCTTCGGAGTAATCCTAATGGAGCTAATCACGGGCCGCAAAGCCCTAGACGAAACCCAGCCCGAGGAAAGCGTGCATCTTGTAACATGGTTCCGAAGAATGCAACTCGCGAACAAACAAGAGAAAACCCTAAAATCGATAATAGACCCCACCATCAAAGTCGAGGATGAGGAAACCCTAGCGAGCATAAGCACCGTGGCTGAGCTAGCCGGCCACTGCTGTGCCCGCGAGCCCATGCAGAGACCGGACATGGGGCATGCGGTCAACGTGCTCGCTTCGATAGCAGAGCTGTGGAAGCCGAGCGACGATCGAGAATCAGAAGACGTGTTCGGAATCGATCTGGATCTGACATTGCCGCAGGCGTTGAAAAAGTGGCAAGGGATGGATGGTGAGGCCGGTTCTTCATCTTTGGGGTTCGATGTCGAGAACACGTACACTAGCACGGGGACTAGGCCTCCCGGTTTCGCCGATTCTTTTACCTCCGTCGATGGGAGGTAG

Protein

Gene

>AfisC3G00828
ATTTAAAAACACCTCCAAAATAAAGAAATTATGAAAACTTCTCTCCTTCCACTGCTCATCATTCTCCTCATCACCGGTAACCTCACCGCCGTCCTCTCCGACACCGACCCCGGCGATGCACTCGTCATGCACGACCTCTCTTCCTCCATAACTGGAATGAACTGGCCATCCAAGTCCGACCCATGCAACTGGGATCTAGTTACCTGCACGGACGGTCGTGTCACCGCAATCCAGCTTGGCAACAAATCCGTCGCCGGCACCCTCCCTGCCTCCCTCGGTAACCTCACTGCCCTCACCCGCCTCGAGCTCCAGTACAACGACCTCTCCGGCCCCCTACCTCCCCTCAATAAGCTCACCGCCCTACAATCCTTACTCCTGCACAACAACAAGTTCACCAAAGTCCCTGGAAACTTCTTCTCCGGCCTTTCAGGACTCCAGTCCGTTTACCTCGACAACAACCCCTTCGATCCATGGCCGATTCCTAGATCCTTAAACGAATGCGTTTCGTTAGTCAACTTCTCAGCCATTTCCACTAACGTCACTGGCGGAGTGCCGGATCTCTTCGGAGCTTTACCAAGTTTGACCCATTTAGCTTTATCTCTAAACTTCCTATCGGGTTCTATTCCAAACACTTTTTCCGGATCCAGCATCCGATCTCTATGGCTTAACAGTCAAAAGGGACCAATCATGAGTGGCAGTATTGAAGTAATAGGAAGCATGTCTGGTCTAGAAGAGCTTTGGCTACAAAACAATGCATTTTCAGGTCCATTACCGGATTTTACAAACTTAACCGATTTATACGATTTGCAGTTAAGAGACAACCAATTCACTGGCATTGTTCCAGAGAGCTTGAAGAGTTTAAAGACTCTTAAAAGACTCACTTTATCCAATAATTTCTTACAAGGGTCAGTTCCGGAGTTTAAAAACCCGATTAAAGAACTAGACATTGATGTTAAGTTGGAGAGCTTCTGTTTAAATAAAGTCGGAGATTGCGATCCTCGAGTGAATGCTTTGTTGCAAATAGTAAAAAGTTGGGGCTATCCGTTAAAATTCGCTATGAATTGGAAAGGGAATGACCCATGTAGTGGTTGGGTAGGAATCACTTGTGGCAGCGATGGAAATATAACTGTGGTTAATTTCCGGAAGATGGGACTGAACGGAACTGTTCCGGAAGAGTTCACCCTTCTTCCGAAAGTGCAAACGATTCTGCTTTCAGGTAACAATCTTATGGGCGTGGTACCAAAAAGCCTTTCGAGTATAACTTCTCTGAAAGAACTGGATTTATCAGACAATAACCTGTCTGGTGAAATTCCTGCCTTTGGCAAGAACGTGGTGGTGAAGACTGCTGGAAATCCGAACATCGGGAAAGACATAGTAACCCCGGACCCGAATTCCCACACGTTGCAAAATGGTACTGGTTTGGGTTCCGATGATAATGGTCACAAGTCAAAACCTGTTTCAACTGGGGTCATTGTGGGCTCCATTATCGCAGTGGTTTTTGGGATTTCCGTCATAGTCCTTTTAGGTTTGTTCGCGTACAAGAAGAAAAGGAAACATAATTCCTTTGGTCGTGTTCAAAGTCCGAATGGTAACAATATGATAGTGCATCCACGTCGTTCCGGGTCGGACCCGGATGCTTTGAAAATCACTATAAACGGAGGAGGAAGTACATCGTCATACAACACTAACATGATTGAAGCGGGCAACATGGTGATAGCTATTCAAGTGCTTCGAAATGTGACCAACAATTTTAGTGAAGAGAACATATTGGGCCGGGGCGGGTTCGGAACCGTTTACAAAGGGGAGCTCCACGATGGAACAAAGATAGCGGTGAAAAGAATGGAGTCGGGAGTGATAACTTCTAAAGGGTTGAACGAGTTCAAGTCCGAGATAGCAGTCTTAACTAAAGTCAGACATAGAAATTTAGTGTCTTTGCTTGGATATTGCTTAGATGGGAACGAAAGGCTTTTGGTTTATGAGTACATGCCGCAAGGGACTTTAAGTAGGCATTTGTTCGAGTGGGAGAAGGAAGGGTTGAGCCCTTTGGAATGGAAGCAAAGGTTGAGCATTGCTTTGGATGTGGCTAGAGGGGTCGAGTATTTGCATAGCTTGGCGCATCAAAGTTTTATACATAGAGATTTGAAGCCTAGTAATATATTGCTTGGGGATGATATGAAGGCGAAGGTGTCTGATTTTGGGCTGGTTAGGCTTGCACCGGAGGGCAAGGGGTCGATTGAGACTAGACTAGCTGGGACTTTTGGGTATCTTGCCCCTGAATATGCAGGTATTGTTTTTTCTAATAATTTTATTTATATGAAGTTTGGCAAACTATAACATATATCAGAAGTTAGGACTAAACCGACCAGTGAACACATGATCATACATGAGTTATGCTAACTGTGGAAAAGGAAGAGTTCATGTGGTTTTTTGTTTTTGTTTTTTTTGTTTTTGTTTTTTGTTTTTTGACCTTAGGTTGTATGTTTTTGCATGTCAAATTTAAGTTTTGAAACTGTAATTTTCAATAAATAGTTGCATTTTCCTTTTTAAGTCAAACTTTACCTATTAAACCCCAGTTTGATTTGTAAAGAAAGGGGAAGCTCACTGAACTCTACTTTAAGCAACTCGATTCATTGAACCCTTTCTCAGGAAACTACACTCAACCTAGTTGGGTGACTCAACATATATAAGGAAACCTGACAAATTTAGTGTGGTTCACGACAATCGTATGAATATAATTGAAATCAATGTAGGGGACCTGACTATATATACAGATGTAAACTGAGAATTGATACCATAAATAGCTGACGAGCTTCCTGCTGTATGATTGTCATATTGTATGTATGCAGTTAGCAGTTATACCATCAGTAAGACCGTAAATTATGCAACTGAATTTAAGGGCTTTCACAATCACATTAAGGTCAACTGTTCTTTTCTTTTTCTATCCATACGAAACAAAAACTAGACTTGTGATGAGAATACTTCTTAGCGTATCAATTGCAACAACAAAACCATGCTTCCACCATGTTTTTTTGCATGTATAAATTTGGAACAATGCAGTTTTTTTATGTGTTTTTTTTACTATGTGATATAACTGCAAAACAATATTTTCTTCCTTTCGAACCAAGGATTTGCTTCAACAATTGACATTGATACCAATTTTGAGCATCTTAGAAATTTCAAAAATGCAATTTTCATCAACTGAAGCTAGATGTCAAAAATCAATATACTGTCTAATTTGTCTAATTTCAAACTTAATAAAAAAAATGCTTGGAAAGGGTTTTATGATGCATTAGTATTGTGGACATTTCATTTACTATCAAAACTTTTTTTTGCATTGGACCTGAGTTTCATGTGTGTGCATAATTTGTCTAATTCTGAGCATATTTGTTTTCCTTCCTCTTTTTAGAAAGTTGACTAACTCTAAATGTCTTAAAATTTACAATAATTGCAGTGACTGGGCGCGTAACAACAAAAGCGGACGTATACAGCTTCGGAGTAATCCTAATGGAGCTAATCACGGGCCGCAAAGCCCTAGACGAAACCCAGCCCGAGGAAAGCGTGCATCTTGTAACATGGTTCCGAAGAATGCAACTCGCGAACAAACAAGAGAAAACCCTAAAATCGATAATAGACCCCACCATCAAAGTCGAGGATGAGGAAACCCTAGCGAGCATAAGCACCGTGGCTGAGCTAGCCGGCCACTGCTGTGCCCGCGAGCCCATGCAGAGACCGGACATGGGGCATGCGGTCAACGTGCTCGCTTCGATAGCAGAGCTGTGGAAGCCGAGCGACGATCGAGAATCAGAAGACGTGTTCGGAATCGATCTGGATCTGACATTGCCGCAGGCGTTGAAAAAGTGGCAAGGGATGGATGGTGAGGCCGGTTCTTCATCTTTGGGGTTCGATGTCGAGAACACGTACACTAGCACGGGGACTAGGCCTCCCGGTTTCGCCGATTCTTTTACCTCCGTCGATGGGAGGTAGTGGTATCGGACAGAAACGTGTTTATACACAGTCTGCTTATAGTTGACAACAAACTGCTCATTAGTTGGTATGATGCTACTCTCTGTTTGTGAGATTCAAACCAATGGTATTATGTCAACCAATGGGTCGCTCGCTTTTAAGTGATATCTAACGCTTTGTTCGATATCAAAATGTGTATTATGTTTGGTTTATCACTTAAGATTTTTTCTAATGTTGTTGTATAATGAGGTAGTTTTTAGTTCTGGATAATGATTTAGTTAGTTTTCACGGTCATATGTATGTTTTGTTAACAGATTTTGTATTGATATGATTGAATTGAAAGAAGAGAAGTTGAATGATGTTGGTTGTGATAAGTCAACTAGTTGTTAATGCAGGTTTTGAATTATATGGAGCTGTAGGTGTTGTATTAATCTGTTTTCTGTTTAAGATTCATTGATTAGGACATGTCTATTTTGTTCGATTGCTATGTGATCGTGATTTCTAGTATTTGGATAATATCTTTTGTTGTGTGGAAGAAAAGCTCTATCTACCACATAGAAGATAACAGGACACACATTTTACATAGCATTATCTATTTTGATTGGCAATCAAAATAATTGTTACAAATAAGTGAATATTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020272462.1	1.8e-300	LOW QUALITY PROTEIN: receptor protein kinase TMK1-like
Swissprot	P43298.1	2.0e-240	Transmembrane kinase 1
trEMBL	A0A8T3B6Y9	8.7e-302	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G66150.1	58.15	0.0	1035	TMK1	transmembrane kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
AfisC3G00828	AT1G66150.1	939	341	18	23	928	23	942	58.15	1035
AfisC3G00828	AT2G01820.1	954	369	21	8	928	9	943	55.87	986
AfisC3G00828	AT1G24650.1	935	376	19	9	928	6	886	52.41	866

Ortholog group

Species	Genes
Allium cepa	g515395.t1; g61217.t1
Allium fistulosum	AfisC3G00828
Allium sativum	Asa2G00745.1
Arabidopsis thaliana	AT1G66150.1
Oryza sativa	LOC_Os03g50810.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	44	59	18.4	0.0018
PF08263.9	LRRNT_2	Family	325	359	20.9	0.00029
PF00560.30	LRR_1	Repeat	412	429	11.1	0.43
PF00069.22	Pkinase	Domain	575	852	167.6	3.1e-49

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005576	C	extracellular region
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0005794	C	Golgi apparatus
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009555	P	pollen development
GO:0009826	P	unidimensional cell growth
GO:0009941	C	chloroplast envelope
GO:0016310	P	phosphorylation
GO:0019901	F	protein kinase binding
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K00924	E2.7.1.-; kinase	EC:2.7.1.-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network