result

Gene information

Detail information of AfisC3G00845

Location

Gene	Chr	Start	End	Strand
AfisC3G00845	chr3	153573945	153577728	-

Sequences

CDS

>AfisC3G00845
ATGTTGCTTCGTCACCTTCCACTCATTCTCACCACCTTCCTCCTCCTCTCTCCCCTCTCCTTCACCTCCGACCTCGACTCCGACCGCGCCGCTCTTCTCTCATTCCGCTCCGCCGTCTCCTCCGCCTCCCCCATCTCCAAATGGAACCCTTCCGCCTCCCCATGCTCCTTCACCGGCGTCCTGTGCGAACACGACCGCGTCACCGCCCTCCGCCTCCCCAAGTCCAGATTGTTCGGCGCCATCCCATCCGGAACGCTTGGTAACCTTACCGCTCTGCGTATTTTAAGCCTTCGATTCAATTCTCTCACTTCTCTTCCTGATGACATGGGGAATCTTGTTGAACTGAGAGCTCTTTTCCTTCAGCACAATTCAATTAGTGGAGAGATTCCGAGTTCGATTTCGAAATTGATTAATTTGATCAGATTGAATTTAGCGGATAATAAGTTTACCGGTAAAATTCCTGTCGATTTGAAGAATTTGAGAAGATTGGGAACTTTATACTTGGAAAATAATGCTTTAACCGGTCAAATCCCTGACCTCGGTCTTCCTAACTTGGTGGGATTCAATGTTTCTTACAATGGTATAAATGGTTCTATACCAAAATTCCTTGAAAAGCAACCAGTAAACGCATTTCTGGGCATTAATGGCTTATGTGGTGGGCCTTTCCAGCAGTGTAAGGAAGCTCCTTCTCCTTCTCCAGCAACTGAAGGGCCTGGAGCCGAGCCAGCTGGAGAAGAAGGTAGCAAGAAACATAAACTTTCAGGTGGAGCAATAGCGGGTATAGTAATTGGATGTGTAGTTGGTTTCTTGATTCTATTGCTGTTATTATTTTTATTGTGCCGGAGAAAAAAAGTGCCAAAAGAGAGAGATAGTTCTTCAAGAGCGGCTTCAACGAAGCCAATTGAAGGAGAATTAGTGGAGCCTGCTGTATTGGCCGCCGAGGTTGCAAGAAGGAAGAGTTTGGAGGGTGGAGGGCGAAATGGGAAGACATTAGTGTTTTTCAATGATGGTGGAAAAGGAGGATATAGCTTGGACGATTTGTTGAAGGCTTCAGCAGAGGTTTTGGGCAAGGGTAGTTTTGGAACTACGTATAAGGCGATGCTTGAGAGGGGGGTCACTGTTGCAGTTAAACGACTGAAAGATGTGAATTTGGATGAGAGGGAGTTGAAGAAGAAGATAGAGGTGATTGGGAAGATGAATCACGAGAATTTGGTGCCGCTCAAGGCTTATTATTTTAGCAAGGATGAGAAGCTTCTTGTGTATGAGTACATGCCTTTGGGAAGCTTGTCCTCGATATTACATGGCAACCGAAATGTAGGACAGAGCCCACTCAACTGGTCAACCAGAGCATCAATCGCCCTATCCTCCGCCCGAGGCCTGTCCTACATCCACTCAACAAGTCCCACATCATCCCATGGAAACATAAAGTCCTCCAACATTCTCCTCTGCAGATCCATTGAGGACGCCCGTGTATCCGATCACGGCCTAGCAAACCTCGTAGGGCATGCCCTAGCCCCGGCCCGTGCTTCAGGGTACCGCGCCCCAGAAGTGACCAACCTCAAAACCATATCCCAGAAAGCAGACGTGTACAGCTTCGGCATCCTTCTCCTGGAGCTGCTCACGGGCAGAGTGCCCTTGCAGGCTACTGCCAATGAGGATGGGTTGGATTTACCAAAATGGGTACGGTCCATCATGCAGGAGGAGAGCAACAAGGTGTTCGATCAGGGGCTGGTGAGGGACGAAAGCGTCGAGGAAGAAAGTATGCAGCTTTTGAAGTTGGCGCTGGATTGCACTGCTCAGGTTCCGGATAGCAGACCTACCATGTCTCAGGTTGTTTCTGGGGTTGAGGTCATTTGCCGCAACTTAAGGATGACTGAATTGGCAGTAGAGTGA

Protein

Gene

>AfisC3G00845
TTCATACCTAAAAAAAAGATTGTCTAGGCAAAAACAAACAAAAAACATATGAAAAAAAAAATCAGCTCAGATATCAATTCATCCTTAAAAGCGCCAATTGTTGAATAAATATTTTTTTATTACTCGTCGCTAGGGTTTTAGGCCAAAAACTGACCAAAGCAGAAACATCCGCCATAGTTTCTTCCTTTCTTTATAAATTATTATTCAAGAAATTCAATCAAAATTAGAAATAAAGAAATGTTGCTTCGTCACCTTCCACTCATTCTCACCACCTTCCTCCTCCTCTCTCCCCTCTCCTTCACCTCCGACCTCGACTCCGACCGCGCCGCTCTTCTCTCATTCCGCTCCGCCGTCTCCTCCGCCTCCCCCATCTCCAAATGGAACCCTTCCGCCTCCCCATGCTCCTTCACCGGCGTCCTGTGCGAACACGACCGCGTCACCGCCCTCCGCCTCCCCAAGTCCAGATTGTTCGGCGCCATCCCATCCGGAACGCTTGGTAACCTTACCGCTCTGCGTATTTTAAGCCTTCGATTCAATTCTCTCACTTCTCTTCCTGATGACATGGGGAATCTTGTTGAACTGAGAGCTCTTTTCCTTCAGCACAATTCAATTAGTGGAGAGATTCCGAGTTCGATTTCGAAATTGATTAATTTGATCAGATTGAATTTAGCGGATAATAAGTTTACCGGTAAAATTCCTGTCGATTTGAAGAATTTGAGAAGATTGGGAACTTTATACTTGGAAAATAATGCTTTAACCGGTCAAATCCCTGACCTCGGTCTTCCTAACTTGGTGGGATTCAATGTTTCTTACAATGGTATAAATGGTTCTATACCAAAATTCCTTGAAAAGCAACCAGTAAACGCATTTCTGGGCATTAATGGCTTATGTGGTGGGCCTTTCCAGCAGTGTAAGGAAGCTCCTTCTCCTTCTCCAGCAACTGAAGGGCCTGGAGCCGAGCCAGCTGGAGAAGAAGGTAGCAAGAAACATAAACTTTCAGGTGGAGCAATAGCGGGTATAGTAATTGGATGTGTAGTTGGTTTCTTGATTCTATTGCTGTTATTATTTTTATTGTGCCGGAGAAAAAAAGTGCCAAAAGAGAGAGATAGTTCTTCAAGAGCGGCTTCAACGAAGCCAATTGAAGGAGAATTAGTGGAGCCTGCTGTATTGGCCGCCGAGGTTGCAAGAAGGAAGAGTTTGGAGGGTGGAGGGCGAAATGGGAAGACATTAGTGTTTTTCAATGATGGTGGAAAAGGAGGATATAGCTTGGACGATTTGTTGAAGGCTTCAGCAGAGGTTTTGGGCAAGGGTAGTTTTGGAACTACGTATAAGGCGATGCTTGAGAGGGGGGTCACTGTTGCAGTTAAACGACTGAAAGATGTGAATTTGGATGAGAGGGAGTTGAAGAAGAAGATAGAGGTGATTGGGAAGATGAATCACGAGAATTTGGTGCCGCTCAAGGCTTATTATTTTAGCAAGGATGAGAAGCTTCTTGTGTATGAGTACATGCCTTTGGGAAGCTTGTCCTCGATATTACATGGTAAATATTTCTTGTTCTTGGTTGTTGGTTTTTTGATTCTATCATACATCATTCAGTAAAAATATAGTTGCAATCTGAATCCCAGTGACATTACATCTTCTAGTTAATTGTTGTAAGTGCGAGGGACCTGAGGGTTTTATGACACAATCCTTTAGATGTTTATAACAGTGTTAAATTCACCCGATTTCTTTTAATTTTAATGAGATAGATTGTTATTATGAAACAATTAAAAAAAAAAAATTAGATAATGTATGTGTAACTATTCTTGTTTTCATATCATGTTAAGCTTCAATTTGTGTAGGCTGTAGATCTTTAGTGGCTCAGAGTATTTTGTAGGTCTGTTTGAACATTGCAAATCTGAAACTGGAGTTGGATGGAGACTGATCGTACTAATGGACACTCAATGCACAATTATTAAGTAGGATACCTGATACACACATGTTTTTTCAACTCACCTGTCGCATTCACGTTTCACACTACCAAATAATGCGACTATGCATATATCATTGTTTTCTATTTTTGCACTATCATGGCAAATATGAGCATGTAAAAAATACGAGAGCAATGCTAAGCACACCACTCTTAGGAGAATGTGTTTAGCATTGTTCAAGAATAATCATGTTTATGTTCTAGGACTTGTTAAATTAATTTTTCTCATGTGGGTTTCTAGTTTGACCATTAAGTTGTCCTTTTGCATGAAATGATATAACAAGAAGGGCTTTTTTTAAAGACCGGTTAAAAAACTTTATTTCAAACTTAACCAGAATACAACTGTAATGGGCTCTCACATAAGAAAAATTGCTAGAAATAAAGTCCATAAATGTTATTCAAAGAATAAACCAATGAAAACAGTCATGTAACCCAGCCCACGATCTCCAAAAAGCCCAATCATACTTGTTAATACTCTTTAGTCCATCTATCCTCGGTGATCTCAATTAGTAAGATTGTCCAGATTGAAAAAGTTTTGCATTATAATTTAGAAATGTTAATAAAACTTATGGAGGACGTGTAGAACCTTGGGTGCATATATGAATATTTTTGGAAGATAATACACCGCACGACTTGACAGTGCTTAAGCAAGAAAGAGTCAATCTGACTATTTATTCTATATCAAGGAAAAATATAATGAAACGAGTTAATCACTCCTAAATTGTAGGTCGAAAGCACGATGATATGGAAGGTGTCATGATCTTTATTCTCATAGTTTAAATATACAATATAATATATTTTCATTGGTTTTACAGTCAGAAAACAAATTTCGTTCAAAAGAAAAAAAATAGTTCAATGTTTGCATCCTGCTAAAGAAATGTTTGTACACTTTGACAGGCAACCGAAATGTAGGACAGAGCCCACTCAACTGGTCAACCAGAGCATCAATCGCCCTATCCTCCGCCCGAGGCCTGTCCTACATCCACTCAACAAGTCCCACATCATCCCATGGAAACATAAAGTCCTCCAACATTCTCCTCTGCAGATCCATTGAGGACGCCCGTGTATCCGATCACGGCCTAGCAAACCTCGTAGGGCATGCCCTAGCCCCGGCCCGTGCTTCAGGGTACCGCGCCCCAGAAGTGACCAACCTCAAAACCATATCCCAGAAAGCAGACGTGTACAGCTTCGGCATCCTTCTCCTGGAGCTGCTCACGGGCAGAGTGCCCTTGCAGGCTACTGCCAATGAGGATGGGTTGGATTTACCAAAATGGGTACGGTCCATCATGCAGGAGGAGAGCAACAAGGTGTTCGATCAGGGGCTGGTGAGGGACGAAAGCGTCGAGGAAGAAAGTATGCAGCTTTTGAAGTTGGCGCTGGATTGCACTGCTCAGGTTCCGGATAGCAGACCTACCATGTCTCAGGTTGTTTCTGGGGTTGAGGTCATTTGCCGCAACTTAAGGATGACTGAATTGGCAGTAGAGTGATTCTTTTAATTTCTCTTTTTAATATATATAAAACTGAATGAATGAATCATGGTTTATTGGTTTATCTACTCTCCTGACTGTCATTTTTCCTTTTTAGTTGATTTTGGTGGTAGATTTTAGGATTTTTCTTTCGTCTCCTTCTTTTCTTGTTTATTTCTTATTTACATTTACATGTCTGCATCCGTGCACTTGTCGGTTTTCCGTTGTCAGAATTTATACTTCGAGACTTGTGTAAGGCTGAAGAGTATGAGATTGGATGGAAATCAAAATTGTTTGAATGCGTGTATATAGTAGAATGCTGAGCTTACACCAATGATTTTGTAATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010926113.1	1.5e-133	probable inactive receptor kinase At1g48480
Swissprot	Q9LP77.1	5.1e-115	Probable inactive receptor kinase At1g48480
trEMBL	A0A6I9RGC9	1.1e-133	probable inactive receptor kinase At1g48480

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G48480.1	53.85	7e-171	597	RKL1	receptor-like kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G00845	AT1G48480.1	624	256	15	22	623	30	643	53.85	7e-171	597
AfisC3G00845	AT3G17840.1	615	254	16	24	616	30	636	53.82	6e-163	571
AfisC3G00845	AT3G02880.1	627	283	15	4	621	5	618	51.36	1e-155	546

Ortholog group

Species	Genes
Allium cepa	g450227.t1
Allium fistulosum	AfisC3G00845
Allium sativum	Asa2G00752.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	26	62	39.7	3.8e-10
PF13855.3	LRR_8	Repeat	66	125	34.4	1.2e-08
PF00069.22	Pkinase	Domain	353	612	132.1	2e-38

Gene Ontology

Accession	Ontology	Name
GO:0022625	C	cytosolic large ribosomal subunit
GO:0003729	F	mRNA binding
GO:0004674	F	protein serine/threonine kinase activity
GO:0007169	P	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0046658	C	anchored component of plasma membrane
GO:0005524	F	ATP binding
GO:0005774	C	vacuolar membrane
GO:0006468	P	protein phosphorylation
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009610	P	response to symbiotic fungus
GO:0009737	P	response to abscisic acid
GO:0009834	P	plant-type secondary cell wall biogenesis
GO:2000605	P	positive regulation of secondary growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20359	RABAC1, PRAF1; PRA1 family protein 1	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network