result

Gene information

Detail information of AfisC3G00856

Location

Gene	Chr	Start	End	Strand
AfisC3G00856	chr3	155250219	155252103	+

Sequences

CDS

>AfisC3G00856
ATGGATCAGACTGCAAACGCCATAAGTGGGAAAACAGCCCGTGCCTGCGATGGGTGTGTGCGCAGACGGGCACGCTGGTACTGCGCAGCCGACGACGCCTTTCTGTGTCAGTCTTGCGACTCCTCCGTTCACTCTGCTAACCTTTTGGCGAACAGACATGACAGGGTTCGACTTAAGACTTCGTCGATGAGGTCCCCGCTCGCTGAGCTGGACTCCGAACTGCCAACCTGGCACAGGGGAGACAGGCAGCGCGCCCGGACCCCGCGTCATGGGAAGGGTTCCAGGCCCAAGCCCATGCTTCTGGTCCCAGATGTCGAAGTGTTTAATGAGTTTGAGGAAGAGGAGGAGCAGCAGCGGTTTTTGTATGAGGTGCCGGTGTTCGATTCCATCGTGGAGTTCTGCACACCGTTGGATTTCGAGTGTGTGGATGGATCGACTGAAGAGGTGAAGCCAGCAAGGCAGTTTGATTTAACGGTGGATGATGGAGATGTAGGTGCTGGAGGGTTCGATCCTACGGATGTGGAGTTGGCGGAGTTTGCCGCTGACGTGGAGAACATGCTAGGGCATGGGCTGGATGACGTGGACTCTTTCTGTATGGATGGGCTAGGCTTGCTGGAAGGGAAAGAAGGTCAGGGACAAGTGAAGCATGAGCACATAGATGAACATAACGAAGATATGAACTTTCTGGTTAGTATGGAAGATATTGAAATGGAGATGTCTAGAGAGTCGCTCGACTTCAAATTGGAGGGCGGCGGGTCCCACATGACAGAGGCTGAAGTGCATAATAAACAGAATGCATCGATGGGTATAGGATTGAAGATGAACTACGATTCAGTGATCAATGCATGGTCATGCCATGGCGGCTCGCCTTGGGCTGACGGGGTCAGACCACAGCTCAGTGCAGATGATTGCTGGTCAAACATCATGGGAGCATGGGGAGCGCCAATAGGAGAGATGCAAGGAGCTAGTTACGGGTTAGGGATAGGGCAAGTTGGCAACTTTGATGGAGGGAGAGAGGCTAGGGTTTCGAGGTACCGAGAGAAGAGAAGGACAAGGCTGTTTTCGAAGAAAATCAGGTATGAAGTGAGGAAGCTTAACGCGGAGAAGAGGCCAAGGATGAAAGGGCGATTCGTTAAAAGGACTTCTTTGCCAGCTGCTGCTAATGCAGCTGCTGGGTCTAATGGCTTTCCTTATGCATGA

Protein

Gene

>AfisC3G00856
GTCCCTCCCCGTCGAAATCAGATAAATCATACATTAGACCTCGGTTGCATAACAAACATGACAGTAACAACGGCACAGCTACAGAACCCCAAAACATAAAACAATGGATCAGACTGCAAACGCCATAAGTGGGAAAACAGCCCGTGCCTGCGATGGGTGTGTGCGCAGACGGGCACGCTGGTACTGCGCAGCCGACGACGCCTTTCTGTGTCAGTCTTGCGACTCCTCCGTTCACTCTGCTAACCTTTTGGCGAACAGACATGACAGGGTTCGACTTAAGACTTCGTCGATGAGGTCCCCGCTCGCTGAGCTGGACTCCGAACTGCCAACCTGGCACAGGGGAGACAGGCAGCGCGCCCGGACCCCGCGTCATGGGAAGGGTTCCAGGCCCAAGCCCATGCTTCTGGTCCCAGATGTCGAAGTGTTTAATGAGTTTGAGGAAGAGGAGGAGCAGCAGCGGTTTTTGTATGAGGTGCCGGTGTTCGATTCCATCGTGGAGTTCTGCACACCGTTGGATTTCGAGTGTGTGGATGGATCGACTGAAGAGGTGAAGCCAGCAAGGCAGTTTGATTTAACGGTGGATGATGGAGATGTAGGTGCTGGAGGGTTCGATCCTACGGATGTGGAGTTGGCGGAGTTTGCCGCTGACGTGGAGAACATGCTAGGGCATGGGCTGGATGACGTGGACTCTTTCTGTATGGATGGGCTAGGCTTGCTGGAAGGGAAAGAAGGTCAGGGACAAGTGAAGCATGAGCACATAGATGAACATAACGAAGATATGAACTTTCTGGTTAGTATGGAAGATATTGAAATGGAGATGTCTAGAGAGTCGCTCGACTTCAAATTGGAGGGCGGCGGGTCCCACATGACAGAGGCTGAAGTGCATAATAAACAGAATGCATCGATGGGTATAGGATTGAAGATGAACTACGATTCAGTGATCAATGCATGGTCATGCCATGGCGGCTCGCCTTGGGCTGACGGGGTCAGACCACAGCTCAGTGCAGATGATTGCTGGTCAAACATCATGGTAACTTCACTTTTATAGCACCTTTTTATTTTTATTTTCAATTTTTTTTCAGAAAAAGAAAAGTCTAACCGTATCAAGCTTACTATCGTAAACTCTAAGCAAGTATACACCAAGTTCAAATTTGTGACCAGACCTCTGGTGAGCTAGTTATTCTACTTACCAACTGTACATGATTATAACACTAACTTTTATAGCATAAACTTTTTATGGCGAAGGCTTTTATAGCATTATTTTTTATAGTGAAGGCTTTTACAGCATTAGCATTATAAGTATCTTTCTTGATGTTTAGGGAGCATGGGGAGCGCCAATAGGAGAGATGCAAGGAGCTAGTTACGGGTTAGGGATAGGGCAAGTTGGCAACTTTGATGGAGGGAGAGAGGCTAGGGTTTCGAGGTACCGAGAGAAGAGAAGGACAAGGCTGTTTTCGAAGAAAATCAGGTATGAAGTGAGGAAGCTTAACGCGGAGAAGAGGCCAAGGATGAAAGGGCGATTCGTTAAAAGGACTTCTTTGCCAGCTGCTGCTAATGCAGCTGCTGGGTCTAATGGCTTTCCTTATGCATGACCGAACCATTGGTCCTCTATTATGTTTTACAGCAGTAGAAGGACAGGTTTTGCAGCTGTTCTTTCATTTTCTTTCAAGCATATGGTTTTTTAACTCGAAGTTGAGTTTCACCGTGTGCTTGAATTAGCTGCATAGGGACTTAGTCCGAAATTCGTCGACTTTTCTATGTTTTAAATGGGATCTAAATTTAGTTATGATTTCTAGATTGTTGTATGCTCAGTACCATAGCATATGCTAAGCGTATGTCTGCTACTTGGTATTAAGAATGTATCTAATAGAGAGAGAAAGCTGCT

Functional annotation

Database	accession number	e-value	annotation
nr	PIA39732.1	2.8e-85	hypothetical protein AQUCO_02600289v1
Swissprot	Q8RWD0.2	8.3e-71	Zinc finger protein CONSTANS-LIKE 16
trEMBL	A0A8K0MYW3	4.3e-88	Zinc finger protein CONSTANS-LIKE 16

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G25440.1	42.96	1e-72	270	BBX15	B-box type zinc finger protein with CCT domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G00856	AT1G25440.1	412	193	13	1	380	2	403	42.96	1e-72	270
AfisC3G00856	AT1G68520.1	419	197	13	1	386	2	405	41.53	1e-68	257
AfisC3G00856	AT1G73870.1	399	186	17	13	383	19	390	39.60	9e-59	224

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	13	56	28.6	1.1e-06
PF06203.11	CCT	Motif	338	380	64.7	5.2e-18

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0042802	F	identical protein binding
GO:0009648	P	photoperiodism
GO:0009658	P	chloroplast organization
GO:0009909	P	regulation of flower development
GO:0010099	P	regulation of photomorphogenesis
GO:0010161	P	red light signaling pathway
GO:0043565	F	sequence-specific DNA binding
GO:0045036	P	protein targeting to chloroplast
GO:0048518	P	positive regulation of biological process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network