result

Gene information

Detail information of AfisC3G00906

Location

Gene	Chr	Start	End	Strand
AfisC3G00906	chr3	161773036	161774995	+

Sequences

CDS

Protein

Gene

>AfisC3G00906
CTTTTATTATAATGCATATTCTCCCTGCTTCCATTCTACAGCCCATGTTAGACTTCCATAAAGTTCTCTCTCCTTTCATTTTCGAAATATATGGTCTGTCACAACCAAATGGCTTGTAATGGAATGCCTTCTTCTTTTTCATTTTTTCCTTCCAGCTTCCATGTACAATTACAAGCTCAAAATGAACCACAAGATCATCAACAATTCACTCACAGTTCTTCTATCTTCACTCTTCCTTCTAATACTCAAGAATTTAAAGGTAATTTCGATGCTAACTAACATAGATTATATCAGCATTGTAGCAGTTGTTTATGATCAATTGTAATTTTTATAGGTGTTGAAGAGGATGATTACGACGATGACTACTCGAAAGCAGGAGAAAAGAAGATGAGGCTGAACATTGAGCAAGTGAGAACACTGGAAAAGAATTTTGAGGTTGGCAATAAATTAGAGCCAGAGAGGAAAATGCAATTGGCTAGAGCAATTGGATTACAGCCAAGGCAGGTTGCTATATGGTTTCAGAACAGAAGAGCAAGGTGTAAGACTAAGCAATTAGAGAAGGATTATGATGTACTTAAGAGGCAGGTCGATGCTATTGAATCAGAGAATTCAGCTCTTCAAGCTCAGAATAATAAGCTACAAGCTGAGGTAACTAATATGCTTGGTTATTAGACTCTTCAAGTGTAGAGCCAATATTGAATACTAACTTTTTATGTAGTTATAATTGAACAGTACTAGCTATATGTTTTGGATGTAATTTGATTTTTAATGTAAAATAAATTAATTTTGATATTTGGTTACTACAACTTACAAATAATAAATGTAAATCACATTACGTAATTGGATATATCCATGTAAGATAAATGGTGAATATTGTATAATTTGCTTGTTGATTTTTCGAAGGAGAAATGTTACTTCAACCATACTTGATCAAAAATGCTTATGAAGTTCTGGCACAAGTTATAAACAACCAATAGTTGCTTCTTCAATAACTTGTAAGCAACTTAACTACCTTCTTATAGTACGGTTCCTTCTTATATTGAGTTTCCAAACAAACAAACTTCAAGTAGTTTTGATTAAAATGTTCAGATATATGAGTCGAAGTTGTGATCAAATTTAGTTCTAAAAGGTGAAATTAGTCGAAACAGGTATTATTGCTTACAACTTATCAACTACTAGGCAGCTGATACTACTCTCCCTATGCACTGTTCACAAACAATAAAATTCAAGTAAGCAATTCAAAAGTAGTTTTAACTATTTATAACAGATAAATATGTTTAATGATGCAGATCATGGCTCTTAAAAGTCGGGACACATCAGAACTAATCAATCTGAATATCAAACAAAGCGATTCATGCAGCTCTGAAATCAATTTCGACATCTCCAGAACGTCGACTATTGATAGCAGTCTTAATCATCAACAAAACATTCCTTTCTTTGCATCGATAGGGCCACTTTCGAATTCAATGGTACAGGTCTCTGATGAGAATTTCAGTAATTTCCTATGCAATATTGATGATCAATCCACTTGGACATGGTAACAATACTCTTCTATTACCTGAAGAAAATAATATTTATCCTTCGTCCACAAAATATTATTCCTTTACAAATTAAATGTGTTTGATGTTGATTCTTCGAGATTGGGGGTTTTAGTTGCATGGTCTTGTATCAAACATTACATTACGAAATCCAACATTTCTTCCTTCCTTCCTTTCTTTTTTTTCTTTATTTTTTTTTTCCTCTCTTTTTTTGTTTTATCTCAAAATACTGTAATAGCTTGTTATTGTATAGGGTCACATATATATTTTGTTGTAGAATTATGTTGTAGGCTATTTTACTCCTACTGTTTGTCTATAACTGGTTCCACAGTGCAATGATTTCAATAAATTATGTTGTAGGCTATTTTACTCCTACTGTTTGTCTATAACTGGTTCCACAGTGCAATGATTTCTATAAATTA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK65242.1	3.1e-47	uncharacterized protein A4U43_C07F35130
Swissprot	Q8LC03.2	1.5e-30	Homeodomain transcription factor ATHB-13
trEMBL	A0A5P1EH75	2.2e-47	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G26960.1	49.21	2e-53	205	AtHB23;HB23	homeobox protein 23

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G00906	AT1G26960.1	252	110	9	7	244	1	248	49.21	2e-53	205
AfisC3G00906	AT1G69780.1	290	108	9	7	244	1	287	43.79	4e-52	201
AfisC3G00906	AT5G15150.1	226	104	5	35	244	76	300	46.46	3e-43	172

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	74	126	53.1	1.8e-14
PF02183.15	HALZ	Family	128	167	49.1	4.2e-13

Gene Ontology

Accession	Ontology	Name
GO:0001558	P	regulation of cell growth
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009536	C	plastid
GO:0009637	P	response to blue light
GO:0009651	P	response to salt stress
GO:0009739	P	response to gibberellin
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009908	P	flower development
GO:0009965	P	leaf morphogenesis
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network