result

Gene information

Detail information of AfisC3G01094

Location

Gene	Chr	Start	End	Strand
AfisC3G01094	chr3	199977581	199981237	+

Sequences

CDS

Protein

Gene

>AfisC3G01094
ATGTTAACAGATCTGTTTCGATTGCAGATGGGGAAAGCAAAAGCGAAGGCGGATACTTCGAAGAAAGCCGATACGAAGTGAGTTTATCATCATTTTTCCGCATAATTTTAGATCTTATTTGCGATTTATTTCAGATCTAAGTTCTGGGGTTGATTTGTAATTTTTTTGTTAATTCTGAAGGCTTTCGGTGAAACGAAAGGCTGCTGAAAAGCCAAAGAAAGAGGCGAAAAAGGCAAAAGCTGCCAAGGATCCAAACATGCCTAAGAGGCCTCCTAGCGCCTTCTTTGTTTTCATGTAATTTTCACATTATTTGGATTAGGGTGTTATTATGTGATTTTTTCCTTTTTTTTAATTTTGATTTGGTGGAAAATTAACAGGGAGGACTTCAGGAAGATATTCAAGGAAAAGAATCCCGACAACAAGCAAGTTTCTGCTGTAAGTACTTGTTTTAATTTCTCAGCTTGCTTTCTTAATCTGTTTCTATTCATTTAGTTTTATTGTGCTGAATTAGGTTGGGAAAGCTGCTGGTGATAAGTGGAAATCTATGACAGCTTCCGTGAGTGATTTTGGAAATTTATCCTTAATATGGTAGATAACTTTTATCGATAGCTAGATCTGAAAATAGTCTTCACGAATAATAGGAAAAAGCACCGTACGAGGCAAAGGCAGCAAAGAGAAAGGCCGAGTATACCAAAACCATGGCTGCTTACAATAAAAAGCTGGTATAATTTTGTAATTTCAGAATTTACATTTCACACCCTTCTAATTAAGAAACTAACATTGGATCAATCTGAGCATAGTCCGACGGGGCAAGCAAAAAAGCAGCACCCGAGGAGGAAGAAGAGGAAGCGGAGTCGGACAAATCAAAATCTGACATTGAAGACGACGACGAGGAAAGTGGAGAGGTAACTTGAACCATTGAAAGTTGAAAAATTAGTTTTAGAATATTTTGGACTTCCAAATGTAATTTACTGATTTTATTTGTAGGAAGAAGAGGAAGACGATTAAAACTGCAGAGGGGCTGAAATGCAATTTCCATCTTTTGTTTTTTGTTGTGCCATGGCTATCTGACCCGTTAAATCATTGTCGTTGTATTTAGCTTCTTCTGTATCGTTACGTGTTGTTTGTTTGCATAATCAAATCTTATTTCAATGAGAAGAACGTACTTATTTTTAGTTTTTAGTTATCTTATGCATTTAGTTCAATGCGATAAATATCATGATATTTTGTGTATATTTTTTAGGGGCCTAGTTTAGGTGAACGAATGGTCAAGGCATTTGGTTCGATAAGCATAAATATTTATGCTTTTATATATATCGTATGGGACCATGTCTTTAAAGTTGGAAAGGGTTAGAAACAGTGACAATTGCAAATAATTCAGTATTCTTCGTTTTGAAGCTGTGCTTGGTCTCTCTGATGTGTACCTGCTACATTATTTTTATACGTTTTGGGCGGTGACAGATGAAATCTATTTGCATTCAAAAGCCATTTAGCACCGAATTTTTGCTTTTATTTGGTTTATTTTCTGTGAAAATGCTGTCTAATAATTCAGTAGCTCTTATAACATCTCTGTGAATGATCAAAAGTAACTTTAAGCACTGAAAGGGCTTTTGGTTTGAAACGGGTTTGATGAAGTATTAACTTCGTTATTATTTGGAACTATATTGTTTATTTGTTTAACATGAATGATTTTCAAATAGCGCTTGTTTTCTCTAAAAAAGGATGCTGCCGACGTTTTGGCGGTAATCAGAAGTTTCATGTATTTCTAAATAGTTATTGAAGTTTCAAATTTGCATGACAGGTTTAAATTTTTATTTATAAAAGGCTGAGCTCGTGATCAGCGACCTATACATTTGAATCCACTTAGAATGCGTTGGTAACAAACGAAAACGGGGTATATGAACAGGTTTAATTTTTTATTTATTTAAGGCTGAGCTCTGATCAGCGAGCTATGCATTTGAATCCACTTAGATTCCGTTTGTGACGAACGAAAACAGGATAGGATATTTGAACGGGGAATGACGAACGAAAACAGGATATATGAACGGGAAATATGAGCGGGGAAAGATGTATGAACGGAGAATATGTTGGCAGCTATGAATATGACATTAAAGTTGCGTTTCAAACGGATCTCGTTTGTACAAGTTAATAATTTTAGAAAATTATAAAAACATGAAAAATTGGTGCAAGTATATTGCCGTCTGATGTCATTGGTCCTCTTCTCAACATTCACACAACGGGGATGAGAACGACTAACGAGGTTATGTCCCTTGCTGCGTCCGACTCTAAAACTGAAACAGACCATTTTATTACTGCGAATGCCGGCTTATGCTATTGCAGCATGATGGCTTTACATTAGTTCGTCTCCAGCCAATGAGAAATACTGGATACCAAAAAGACTGGACTGCGGATGTTAGTTGTAACGATTCGAAATGTTATCATTTTTGATTTTTGGATTAGGATTTTATAAAATATACTAGAAATCTATGTTTCAAAATAATTGTTCGATTCTTGATGACGTATTTTTAATTTAATTTATATAAATTTTCCATAATTCTTAATTGGAAAATAAATAAATTTTTGTTGACATATTCTACGTCGAACATTGGTATTTTTAAAATTAAATAGAATAAATTAACTTGTCTATTTTATTGTGGTTTGGTGATCACGTTCGAATTCTGTGCACAATCATATTTTATTTTCTGTCGTTCACGGCTCGTATACGGACGCGGTATTTTGCGGTTAGGTATGCAAAATCTTTTCAAAATTAATATAAACCCATATGCCCACACATGTACACTGTGCTCAGCCTTTTTTTCCCTAGCCACCTTTCTGTTCCCATAGCCACCATCGTTCCCTGAAGCTTGACCTCTGATTGAAATCTGGTCACTGCCCAAATCTCTCTTTATGTGTGTATATATACACGAACGTCATTCTCCCTTTTCATTTTGCAAGCTCCTTCCAATAAACATTTCAACCATGAAACCAACTTCCTTCTCAAACTTCAAAAATCAATTTTCCCTAATCTATCCACTTTCAACAAAATCGGTCAACACGAAAGTAATTCGTATCGGTATCTAGTTTTTTCTTTCTTTCTAAATTGGTCGCTCGAATTTTCGTCGGAAATCGAGCGAGATTTCACGATTTTACAGTAAAAGGAAAAAGTTGATCATAATCTTGAAAAATTAAATTCTCTCGATTTACTTCGAATCGATCGACGTCTTATGCATTGTTGAGATCGTATGGCGATGAAGAATTTTTGGTGAAGTTTCGGCGGAGTTTCGTGTCGATCAGACGGTTGTTCGATACCAGGGTTTGGTTTTGCTCGGCCTACGGTCAGTGATTGGTGATTTGAAGCTTGGATTGGTGATCGTGGAGGAGAGAGCTTCGAGTGGTGAAAATTTGGCGGGGATCGAAGTCAAAAATGGTTGCATGTTTTCACGACCCGGGCACGAAAATAAAGGGGAACGACAGAATGGAAATTGCATCGGAGGGCGCAGTAGTATCGGGGTCCATCGTGACGAGAGCAGGATGGCGAGCGTGCTGGTGGTCGTTGATCGATGGATAAGGGGATGGTTGGAGGGTGCATGCGCACGGTCGTGCACGTATTCGCGTGTACAGAAGCTGAGTTTGGAGAAGGGGAAGAAGGTACCGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	AEX55234.1	3.6e-29	HMG transcription factor
Swissprot	O49596.1	4.5e-21	Nucleosome/chromatin assembly factor group D 02
trEMBL	H2CLX0	2.6e-29	HMG transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G51880.2	55.00	3e-35	145	AtHMGB1;HMGB1;NFD1	high mobility group B1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G01094	AT3G51880.2	160	53	4	8	160	1	148	55.00	3e-35	145
AfisC3G01094	AT3G51880.3	159	53	4	8	159	1	147	54.72	2e-34	142
AfisC3G01094	AT3G51880.1	159	53	4	8	159	1	147	54.72	2e-34	142

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00505.16	HMG_box	Domain	53	122	80.0	1.2e-22

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000400	F	four-way junction DNA binding
GO:0000785	C	chromatin
GO:0001934	P	positive regulation of protein phosphorylation
GO:0003682	F	chromatin binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0031497	P	chromatin assembly
GO:0006266	P	DNA ligation
GO:0006281	P	DNA repair
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0006935	P	chemotaxis
GO:0008301	F	DNA binding, bending
GO:0010197	P	polar nucleus fusion
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0030334	P	regulation of cell migration
GO:0030527	F	structural constituent of chromatin
GO:0031981	C	nuclear lumen
GO:0032732	P	positive regulation of interleukin-1 production
GO:0034134	P	toll-like receptor 2 signaling pathway
GO:0034142	P	toll-like receptor 4 signaling pathway
GO:0040017	P	positive regulation of locomotion
GO:0044444	C	cytoplasmic part
GO:0044765	P	single-organism transport
GO:0048523	P	negative regulation of cellular process
GO:0048731	P	system development
GO:0051052	P	regulation of DNA metabolic process
GO:0051223	P	regulation of protein transport
GO:0065004	P	protein-DNA complex assembly
GO:0065009	P	regulation of molecular function
GO:1902533	P	positive regulation of intracellular signal transduction
GO:2000026	P	regulation of multicellular organismal development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11296	HMGB3; high mobility group protein B3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network