result

Gene information

Detail information of AfisC3G01123

Location

Gene	Chr	Start	End	Strand
AfisC3G01123	chr3	204590620	204593341	+

Sequences

CDS

Protein

Gene

>AfisC3G01123
TGAGAATCTGCAAAAGAGAAAGCTTATTAAGAAAAATGAAAATGACACATAGAGTAGCTATTGTCTTTGAAATCTTTTATATATGTGTTGATGCCTATGTTAAAAGAAAAGCAAACCAAAGGATTCGGCAAAAATAAAAGAGAGAAATGGCACCAATAGGACTTCCTCCTGGCTTTAGGTTTCATCCTACTGATGAAGAACTCATCAATTATTATCTTAAGAGGAAGATCCATGGTCTCAGTATCGATCTTGATGTCATTCCTGAAGTTGATTTGTACAAATGTGAACCATGGGAACTTTCAGGTTCAATCATTTTCTCCTTTTATTATAATTTCTATTTTATTGCTTGTACATATATGCATTATGCCATATCACCTGTATAACTTGCATTTCAAAAGAGAAGGTTCATCTGGTTAGACCATTGAGATATTATAGTATATACACAATTCTTTAGGGTTTGGTGGTATAACTTGCATTTCAATCTAACTATTGTTGGTTCTTTTGTAATTGTAATCCAAATGGATATAAACAGCATGCTATAATGCATATTTTCCATATTTGACTAAGTGCTTTTTATAATGCATGTGGTAAAGAACTGTTGTAAATCATGATTTAAAACAGTAATTGGTTAAGTACATGCTTATATATATGTGAAATGTAAACATTGAGGCACACATTTATATTACATGATCATCTTAATTTCTATATCAAGACTTGAATATAGTTCATTTGATTTGAACAGAGAAATCATTTTTGCCAAGCAGAGACCCAGAGTGGTACTTTTTTGGACCACGGGATCGAAAATATCCAAACGGGCTACGAACAAATAGGGCAACTCAAGCAGGGTACTGGAAATCTACAGGAAAAGATCGAAAAGTTTGTAATCAAAATCATGCAATGATTGGGATGAAGAAGACATTGGTTTATTATAGAGGACGAGCTCCTCAAGGAATCAGAACAAACTGGGTAATGCACGAGTATCGTATAGATGATAAAGACTTTGATGACAGTGCAGGACTACAGGTAAATAATTAATATATTGCATTCCATAATATTTGATGAACCTTCGTATGTTTAAGAATCTAATTTAAATATAGCTCCAAAAGATTGCTTATCTGGCTAAAATATGGAGACTTCAAATGAAAAATGCAGGAGTCAAATCTGAACAAATGCAAACGCCTTTGAATAACTTGAAATATGTAATATGGGGTGGCACATATTTCCTTAGGTGATTGAATTACTTTTTAGTTTTTACCATATAATGTAAATGTGCATTTGGATGACCTGGGTTCATCCTCCATTTTACTTTTAAGAAAAAGATTGATATTTTCCAACTTCCATTTCTTTTACCATATATTATTACTTAGAATAAGATAAGATGATGCAGAAAATAATATTTGAAAAAACAAAGGATGGACTCCTAAATCCTAATACATGATATGCATATATCATAAGTTGGTTTATATGGAAGATGGTAAAGACAAAAGGATGGATTCTACCTGTTGCTTTGTGCATGATGTGTGCGTGAAAAATTAGGGCTTTTCTTTTTGTCTTGCTTTATATCCAATAGAAAAATCATACAAATATTCCTTTCTTCACACAATCCAAGATGAAAAGATCCAACTGCTTGTTTCTTTATGTTATGCAAATTGTACTTACATGTGACAAATTTATGTTTCAGTACCTTATATTATAATCTTCTTGCAAGTTCTTTACATATACTTTAGGTAGGTAAAGGTATGATCTATCTGTTGTATTCACTTTAATGCCTTTTAAGTTTTACTATTATCGGTATCAGTTTGGATAAGGGGAATGATTGGGTAGAAGTAAAATTATATATTTTTGCAATTTTCTATATCTTTTTTCCTTCTAATTTGGATGTTCCTATCAGAATCTGAACTAGATTTATCATGGTTTTTCATCGATGCATTATAAAGATTCTAAAAGCTGACCGTGGCACTGTGAAAAAGATGTTTCTTTTATCCTTGACCGTCAATTTTTATTGTAATACTAATCACATAATTCACATTTAATACTAGAGAATTATAAAAAAGAACAAATTTTGAAAAAAATTAAAACCGAAGGACATCAAGTTTCATTTTTAGACTGAAGGACAAATGACTAGTTAGCATTTGTCCTTCAGCCTAAAAATGAAACTTAGTGTCCTTCGGTTTTAATTTTTGCCAAAGTTTGTCCTTGTGTTTATTTTTTCTGTAATATAATTTATTTTTATTTGCGCATTTAATATTTGAACTTTTCTTTCCAATAGTATATGTCCAGAGCAGTGTTTTTAATTCAGACTAGTTGTTCTTGATCTCAGAAAATATTTAAGTTATACTCAGATGTATAGTTAAGTTTACCCATTGCAGGACTCATATGCACTTTGTAGAGTGTTCCTGAAAAATGTGGTGAGCACAGAAGTAGAATATCAGGGGCAATGCAGTAATTTTACATTACTCGAGAGTCCACAATCAATTGAAATCATGCCATCTGATGTGTCAATAGAGACTTCGTCATGCATGGATGATGATGTCGACAAAGATGAATCATGGATGCAATATATTACTGATGATGCTTGGTGTCTGAATAATGATGATGAAGGTGGTGGTTCAGGGCAACATCCTCAGTATTCTTCTAACTGTTTGATTTGATATACTTTGCATCTGTGGATTCATATTTTTCTTTTTTGGTTTGATTGATATTTGGTGGTGTTTATATTGTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020260871.1	5.1e-103	NAC domain-containing protein 86-like
Swissprot	Q9FFI5.1	4.0e-68	No apical meristem-like protein
trEMBL	A0A5P1F0U3	3.7e-103	NAC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G17730.1	65.85	3e-89	324	anac057;NAC057	NAC domain containing protein 57

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G01123	AT3G17730.1	246	64	6	1	229	1	243	65.85	3e-89	324
AfisC3G01123	AT1G65910.1	167	53	1	1	167	1	166	67.66	2e-70	261
AfisC3G01123	AT3G03200.1	164	43	2	1	163	1	163	72.56	2e-68	255

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	7	134	103.5	7.2e-30

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000398	P	mRNA splicing, via spliceosome
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0002230	P	positive regulation of defense response to virus by host
GO:0002237	P	response to molecule of bacterial origin
GO:0003002	P	regionalization
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003713	F	transcription coactivator activity
GO:0005829	C	cytosol
GO:0005516	F	calmodulin binding
GO:0005682	C	U5 snRNP
GO:0005685	C	U1 snRNP
GO:0005686	C	U2 snRNP
GO:0005687	C	U4 snRNP
GO:0005730	C	nucleolus
GO:0005732	C	small nucleolar ribonucleoprotein complex
GO:0005789	C	endoplasmic reticulum membrane
GO:0008283	P	cell proliferation
GO:0016032	P	viral process
GO:0009555	P	pollen development
GO:0009819	P	drought recovery
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009834	P	plant-type secondary cell wall biogenesis
GO:0010029	P	regulation of seed germination
GO:0010072	P	primary shoot apical meristem specification
GO:0010223	P	secondary shoot formation
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010455	P	positive regulation of cell fate commitment
GO:0015030	C	Cajal body
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042542	P	response to hydrogen peroxide
GO:0042803	F	protein homodimerization activity
GO:0043068	P	positive regulation of programmed cell death
GO:0046540	C	U4/U6 x U5 tri-snRNP complex
GO:0046982	F	protein heterodimerization activity
GO:0048467	P	gynoecium development
GO:0048527	P	lateral root development
GO:0048829	P	root cap development
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051782	P	negative regulation of cell division
GO:0071004	C	U2-type prespliceosome
GO:0071013	C	catalytic step 2 spliceosome
GO:0071365	P	cellular response to auxin stimulus
GO:0071470	P	cellular response to osmotic stress
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0090400	P	stress-induced premature senescence
GO:0090602	P	sieve element enucleation
GO:1900057	P	positive regulation of leaf senescence
GO:1900426	P	positive regulation of defense response to bacterium
GO:1902074	P	response to salt
GO:1904250	P	positive regulation of age-related resistance
GO:0090691

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network