result

Gene information

Detail information of AfisC3G01200

Location

Gene	Chr	Start	End	Strand
AfisC3G01200	chr3	215813268	215816539	+

Sequences

CDS

Protein

Gene

>AfisC3G01200
GGATGAACCCCCCACTACCTCAGTTCAGAAAACAATAGCAGGCTTTTTGACAGTATCTATGGATTTGAGAAATCAATTCAATCTACTTATAATCAAAGTTAGAAACAAAGAATCCTCACTTTTTCAGTCATACTACTTCACTTCCTTCTTTATTTCCACAACTCTTTGAACTAATATCATTCGATTGTAGGTTTCATTTGTTCAAGTTTTTGGGTTAAAAACTTAAAAGTTTTGCAAAAATGAGTTCTGGAACACTTACCTCCAATGCACTTCCTGCTTTTGTCGTCTATGAAACAATCACTGCTTCTTCAATTCCTCAACATCACATTATGACCTGCAATGAAGCAGGACCAAGTCAGAATTTGCTCTGTAATTATAACAGCAGTGGAGTTGAACAGTTTCAAATTGGCAGTATCGGATCAATGGCAATGAGTAGTAATTTTTCAGAGGTTGCAAATGTTACTGCAGGAAGAAAAAAGAGAAGGAGAAGGCAGAAAATAAGTAAGAACAAAGAAGAAGCTGAAAATCAAAGGATGACTCACATTGCTGTGGAGCGAAATAGACGCAGATTGATGAATGAACACCTTGCTGTTCTGAGGTCTCTTATGCCTGAATCGTACATTCAGAGAGTGAGTTCTCCTTATAAACCATTTTTTGCTTTATTTATATTGGCCTGGTATCTAGCTTAAAATTTAATGCTCATTAAAGACTGTCATATACATTGTCTATAGTTTCCTTGACATGAATTTGACATAAACAGGATTGGTGCTAAGTCACTATCATGTGCATAGTTTTGCTTTTCTTTTTTTCCCCGTATTAAGTTCTGCCACACTTAAATGATGAGAACAAGATTCAGATCCTCTGCTATGATATTTTATCAGAGAACTGAACCATCCAATTTTGAATTAGACAGTCCAGATCCAGTTCCTATCATAAGATGCATGTACAAAAAAAGAATGCATGCATACATTTATTACGCTTTACTTCCCTAAACAGATGTTAGTTCATTAATTGTTGTAGGGTGACCAAGCCTCAATAGTAGGAGGAGCTATTGATTATGTTAAAGAACTTGAACAACACCTACAATCTCTTGAAGTTCAGAAAAGAACACTTCAGCAGCAAACGAAAACTATGGCTGATGCTGAAAATTCTCTTTCTAATACTACCATTCATGATGAATCTAATACTGGTATTGATAACCATTATGGAGATTGTAAAACCCCTCCATTTTCTAAGTTCTTTTCATATCCACAATACACTTGGTGCCATACGAATTCATCGGAGTATGGTCAGTCGATGCAAGAATGCTTAGCATCGGTGTCGGTTGGTGATATAGAAGTAACGTTGATTGAAACTCATGCTAATGTTAGAGTTTTAACTGCTAGAAGGCCAAGGCAGCTTCTTAAGATTGTGGCTGGATTGCAAACACTAAGGCTTTCGATCCTACATCTTAATGTCACTACAATGGATGCTATGGTTCTGTACTCTTTGAATCTTAAGGTATGTAATAATGCATCATCCACATCTCAACTTTTGATGCATGTCCTCCATATAGCTGCCATATGCTTATTAGCTGTATTTTATCCACTAAAACACAGTGAAAACTAAATTCTCCCAACTTAGATCCAATGTTGATCCCTGACTTTCCCCTTGATTGAAAGTAACCTTAAAAGACAAATGTGGTTCTTATGCCACTTACTTTTAGCATTAGGACTCAGTTGGATTGTATAGAATTTAAATTTTCAGGTATAAAAGGTTGCCTTACATATATTTGCATGTGGTATATACTTCTCATGAGGTTGATTTAAGCAGGAATCGCATCCACTCACAAAGCTAAACTTAAAATACAATTACCTCATGTGCTATATAACTTACACAATTACCAACATGATTTTGTATGGCTATGTGTAGATTTATTGTGTTTTGTGAGGTTAGTTAACCAAATCAATGTCTTGTGAAAACTGAGAACTGTCAGTTATTCTCTGCAAATTTTTTCTTCTTTGTTAAGTATTTACTTAAAATAGCTGATGGTCTTTGGGTATCATCATGTTCACTATTTATGCCAGAAGACTGTTCTTGGGTTTCATAAAATATTACTGTTGTTTTACTTTGGGAAATGTTTGTCGGCCCAATTTTTTATGCACTATCCGTATAAAGCCATTATTTATAAATGTACCTAAGGGACAAAGAAAGAAGCGAAGTTCTCTAATTGTATAATTTAATACAAACAAGAATATAAGTACATACCTTAATCAATAACTAAAAGGTCAATGCAATTCATGGAGATGGGTTAAATTATAATGACCAGTATTACTATAACATAAAAATGTGCTAAACAAATACTTTAAACATAAGTAGCTGTATGAACTAACTGGTTTCAAAATAAAGAAACCTAGGGTTCCATTTTAGTGAATACCCACATGCTAGTGCCATCACTCTCACCTTTGCCTCCATTATTTATCCAAGTTTCATACTTTATAAGTTGAAAGATGCTGAGTAGGGAGATTACGAATGAAGTGAAGACAGGCAAAATTGACCTTGTTTTCTTTTGATGGTAGAAAAATTTCAAAACTTTTATAGGGCCCATGTTGTCTCACATAAATTTCTGTGAAAAGTTTTTCAGTACCTATAGAATCAAGTAAAGCCTGCCTAGCTTCTGATATTGATTTACTTAATAATAACATATTCCAAAGGGAAATCATTTAACAACTGTGTGACCATTTTCTTGCTTAAAGGAAATTGTTCTGGATGTTACCTGCTGTGCCTAGTGATTAAAATCATAACCTGTGATTGAAAACAAAATCAGTTTAGTATCTATAACAATGCTTACAATTATGGAAGGAATAGCAGTTTGTATGAAATGTCCCATTAATTATGTTTCTTCCCCCTGTAGAACGAGTAACTGAATATGCAATTTTATTTTGAAGGTGGAAGAAGGATGCAACATGACGACAGTAGATGACATTGCAGCTGCGGTGCACCACCTACTCACCTTGATAGAAGCTGAAACAGACCCATCGTCTTTTGTATAGAAGTTCAAGATCGTCGCCTAATGTAACCTGTTGCCCCAGGTTCAATAAAACTGGCCCAAAGTCAAGATTTCATTAGTTTTCTAACCTGTAGAATAAGCTAATATCGTTAGTAGTGAAGACTTGGGCTAGGTATGCAATAAAAAAAAATGGTCTAGCTTTTGTAAAGGTGTCTTAGAATAAGTAGGGAGTTAACTATGCCATTTGTGAAGAAACATAATGTACAAGTAAGCTTGAAGCAGT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_017697652.1	4.2e-76	transcription factor bHLH71-like
Swissprot	Q9SK91.2	3.0e-50	bHLH transcription factor bHLH094
trEMBL	A0A8B9A9S2	3.0e-76	transcription factor bHLH71-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G72210.1	52.81	3e-62	235		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G01200	AT1G72210.1	231	82	3	88	318	114	317	52.81	3e-62	235
AfisC3G01200	AT1G22490.1	230	82	3	89	318	105	304	51.30	1e-55	213
AfisC3G01200	AT5G46690.1	242	99	3	87	317	76	302	48.35	4e-49	192

Ortholog group

Species	Genes
Allium cepa	g185167.t1
Allium fistulosum	AfisC3G01200
Allium sativum	Asa0G01704.1; Asa2G00820.1; Asa3G03853.1; Asa4G04799.1; Asa6G00322.1; Asa7G01983.1; Asa7G04704.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g46560.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	97	148	42.4	4.6e-11

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0046983	F	protein dimerization activity
GO:0009913	P	epidermal cell differentiation
GO:0010377	P	guard cell fate commitment
GO:0010444	P	guard mother cell differentiation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045597	P	positive regulation of cell differentiation
GO:0051782	P	negative regulation of cell division
GO:0061086	P	negative regulation of histone H3-K27 methylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network