result

Gene information

Detail information of AfisC3G01343

Location

Gene	Chr	Start	End	Strand
AfisC3G01343	chr3	237852529	237853628	+

Sequences

CDS

Protein

Gene

>AfisC3G01343
ATGCTATCAGGGTTTCAAGCATCACCCTATCTCAATCAAAGTAATATAACTCAACAGCTCAGAAACTACGAAGCAGACATTTCAAACCAATGGACTATGATGCCTTCCAGCATAAACACCCCTGCACAAAATGCTACATTTGTTAGGACGTGTCTTGCTACTGAGCAAAAATACCCAAATTGGTTGACTCAGTTGCCTCCAAATGATAATAATAATAAAACCTTATTAAGACCTAATGCTGTGCGACCTCATCCTATAGCAGCTGCTACTGCAACCAGTAGCATGACTGCTAAAACTGACAATGGGGGTTGTAAAATTTTTGGGTTCAACATTAACAGTCAACCTCCAATATCTGAACCATGTATTCAGCAGGCACCGGAGGTAATAATACCCAACCAAACTTTAGAGCCATCTGCAAGCATCAGGTCGGCTGAGTCTGCTTCAGGTAGTGAGAAAGAGAAAAGCCTTCAAAAGAGTGCAAGTGATGTTAAAGATCTTCCAAGAAAGTTATCAAGCAGTTCAACAAGGAGCTGCACAAAGGTATTCCATGTATAGTTATATGCTTCCTTTTTTTTATCATTAGTATTTTACCATTGTCCTACTCGGTTTGTAGCTAATGATATAAAAGCAATTATACGTAGGTGCACAAGCAAGGGATTGCTCTTGGCCGATCAGTTGATTTAATGAGGTTTAATGGGTATGATGAGCTGATTACTGAACTAGATCAGATATTTGAATTTGAGGGAGCGCTGCTGTCTCCAGATAAAACTTGGATGGTTGTATACACCGACAGTGAGGGTGATATGATGCTTGTTGGAGATGATCCATGGCAGTAAGTATTCCATCTATGCACATAAGTAACTGACAAAACTTCATCGATTATCAATTGGCATTATATATGTTGTGTATTTGTATTTAACAGGGAATTCTGTAGCATGGTTCGAAAGATTCACATCTTAACCAAAGACGAGGTTCAGAAAATGAACCCACTCGGTCCAAGAAGCAAAGCTTCTTCAACTGCAAAAGAGGACAAATCAGTGGACAACAAAGAGGTGAAGAGTGCAAGAACGATTGAATCAATGAAAATGTTAGCATTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020261177.1	2.0e-56	auxin response factor 2-like isoform X2
Swissprot	Q5JK20.1	3.0e-44	OsARF2
trEMBL	A0A200QGY2	2.3e-49	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G62000.1	44.39	8e-42	167	ARF1-BP;ARF2;HSS;ORE14	auxin response factor 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G01343	AT5G62000.3	205	103	2	96	291	646	848	44.39	8e-42	167
AfisC3G01343	AT5G62000.2	205	103	2	96	291	646	848	44.39	8e-42	167
AfisC3G01343	AT5G62000.1	205	103	2	96	291	646	848	44.39	8e-42	167

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02309.13	AUX_IAA	Family	161	265	48.3	1e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009725	P	response to hormone
GO:0010050	P	vegetative phase change
GO:0010158	P	abaxial cell fate specification
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network