result

Gene information

Detail information of AfisC3G01443

Location

Gene	Chr	Start	End	Strand
AfisC3G01443	chr3	260222091	260223247	-

Sequences

CDS

Protein

Gene

>AfisC3G01443
ACATTGAACAATAAGGCCATGAGAATTCATCAAAATCTACGCCGCCTGGCCAGTGACAAAAGCAGCATCACCATCGAGCCCATAACTGATCAGTATTCAACGGTTAAGAGCTCGCTTCAATCGTCGCGGTACAAAGGGGTGGTGCCACAGCCGAACGGCCGATGGGGAGCCCAAATATACGAGAAGCACCAACGAGTCTGGCTCGGCACTTTCAACTTGGAATCTGAGGCCGCCAGAGCTTACGACGTTGCAGCCCAGCGTTTCCGTGGCAGAGATGCAGTCACCAACTTCAAACCTCTGTCCGAATCCGATGACTCAGACGTGACCGAGCTACAGTTCCTGGACCTCCGCTCCAAGTCCGATATCGTTGACATGCTGCGCAAACACACATACACCGACGAGCTGTTACATAACAGAAGGAAATCTTTATGTAATTTCAAAAACAAAAGAAGTACCGATGTCAAACATCTGAACAACTTTGTTAGCCTGGTTAAGCAGGAGCATCTGTTTGAGAAAACTGTGACACCCAGCGATGTGGGCAAGTTGAACAGGCTGGTCATACCTAAGCAGCATGCTGAAAAACATTTTCCACTGAAGGGTGGAAATGGAATATTGCTTAATTTCGAGGATGGAAGTGGAAAAATTTGGAGATTTAGGTACTCGTACTGGAGCAGTAGCCAGAGTTATGTTTTGACCAAAGGATGGAGCAGGTTTGTGAAAGAGAAGGGTTTGCGAGCAGGAGATGTAGTCTCTTTCCACAGCTACTGCTTTGTGGACGGGGAAGAAGGTGGAAACGAGGAGAAGCGTTTGTTTATTGATTGCAAGCATAGGATTATCCAGCAGCTTCCTCGTGTTGTCAGGTTATTTGGTGTTGATATCAATTCCAATGCTGGTGATTGTTGCATAAATTCTAATGCAAAAAAGATGTGTGGTACAGTTGATTCTTCTTGATCGAGGAGCTACACGTTCCTTGTAGTTATTTTATGTGTATTCTATAAAGTTTTAAGTCGTTTTTAGTTTGATTTTGTAGGATAGGGAGTATAAACCAAAATGCGCGTTTAAGATAAACTTATTACCTATATTTGGTCCATTTTTAGTTTCTATACATGTTTGGTCAAATTTGGTATGTACTAATACTATTTGTTTCCTATATTTGG

Functional annotation

Database	accession number	e-value	annotation
nr	KAF3328869.1	4.3e-86	AP2/ERF and B3 domain-containing transcription repressor RAV2-like protein
Swissprot	Q8RZX9.1	1.1e-86	AP2/ERF and B3 domain-containing protein Os01g0693400
trEMBL	A0A833QT19	3.1e-86	AP2/ERF and B3 domain-containing transcription repressor RAV2-like protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68840.1	58.98	6e-86	314	AtRAV2;EDF2;RAP2.8;RAV2;TEM2	related to ABI3/VP1 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G01443	AT1G68840.2	295	89	8	7	287	35	311	58.98	6e-86	314
AfisC3G01443	AT1G68840.1	295	89	8	7	287	35	311	58.98	6e-86	314
AfisC3G01443	AT1G25560.1	312	107	9	7	302	42	339	56.09	1e-84	309

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	36	84	34.7	1.5e-08
PF02362.18	B3	Family	164	249	97.7	2.7e-28

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009536	C	plastid
GO:0009741	P	response to brassinosteroid
GO:0009910	P	negative regulation of flower development
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0048366	P	leaf development
GO:0048527	P	lateral root development
GO:0048573	P	photoperiodism, flowering
GO:0080113	P	regulation of seed growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09287	RAV; RAV-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network