result

Gene information

Detail information of AfisC3G01475

Location

Gene	Chr	Start	End	Strand
AfisC3G01475	chr3	264223155	264228921	+

Sequences

CDS

Protein

Gene

>AfisC3G01475
ATGTTAGGTGTCCAGGTATCCACATCCACAATACCTACATCATACGACATCACTAGAGTGATAGACTATGGAAAAACAATTAAAGAAAACATAGCATCCATCAAACAATTCTCACTGTCACTCAATGTGCCCCAGGTATATGATAACTCGTATGACCATTCCTCTACTAGGGATTAATGGAAAAATATCGGTTCCAATGTATTCGCCTATAACCCAAAGTTGACACTAGACCCATTCCACTGGTCTGGGATATACGAATCCATTCCACCGATCAGGGATAGCCATTCTAAGTACCCAATGAGCGTCCTTACAATACCCTGCTTTCAAGTATAATAGAAAACACTCCTAGTATCAACGATCCCTTAGCACGTGTATCTAAGCCCTTTTTCCTTGCTCCATCAAATTTCAATTCATCCTTAAGAACCATTCCACGTTCCTTTCTTCCACGATAGAACTATTCAACATTCTATCTATGGGTCACCCTTCCTAGAACCCGCCCTTTATAGGTAATCATCCTTGCGACTCCTTTTAACATCGATGTCATCCTCGGAATATAACTCCATTCATTGTCAAGTTACCATCATCGAAGTCCTGAAGCTATCATCCTCACTCTGCTATCACGTTTCCATCGAACACTCATCAAAAAAACAAATACCTTTAGCATGACCTACCGAACATCCTCTTCTCCTCCTAGAAGTTTGACCTTCATAAGCCTTATGAATTCATGTTGGAATTGACTAAAAGGGGTTGGCACTGATATGAATTCCTAAACTTATACTTACCAAAATTTAGCTAAGTATTTTCTTCTCGATCTCTCCTCCATTTACTTGCTTATGACCTCTTTCCTTCATGCCTTAAGCTCCCAAGTGCCTAGCACTAACTTGCTGCCAAGAAAAGAGGTCGCTGAATGATCCAAGGGTTGGAAGCTCGAACATGGACAAAATTTCTGATACAGATATTATTTAAGGAATTGGTTAAAGGTTGCCTCTTACAAACATGATGGAATTATATAAGAACATCATTCACCTAAATCTCAACTCACTTTGACCATAATGGTGGATGATCTTAAGCTGTGAGATCAAGGTTAGTATCGTACATAATGTCCAAAGCAAAGATGtGTCATGGAATGTAGTAGGATTAAGTTGGAATGGGCAATTGTTATAAAACTTACATACATCAATAAAAAGAGGTGAAGGTGAAAGCAAGGCACAAGAATACATATGTTCCATATTTTAGATGAAGTAACCCTTAAGGGTTGGTTCCATGTAGCCATGGGGCTGGGGTAATAACTTCAATCCCCTCATTTCCATAGCATTCGACGATATGCTCAATCTATGCCCTAGAGTTTAGTGACGAAGTAGGTTCAGTCATTTTCTATTCATGCAATAATTAAACTATGTTAACAAATAACTATATTTTACATCTAAACAAATAAAGCCTAGGCTAACGGTATAATGTCCGTAGATAAAAATAAAAGCCCAATTAATTCAAACAATTAACATACATCCTAAATTATTTTCATGATAAAAATAAATAACTTAAAAGGAAAATTTTATTACAAAATTTCATTTTATCAAAAGCAAGTTTCTCATAAAGTATAAAAAAATTGAATATAGATTTAAAAAGTGAGAATCAAATGAGATAATCAACATATCAGATTGTAGAACCTTATTAGAAAGAGATTAAATAAAAAAACAAGTGATTACATGAACTGTTATTGAAGAAGAAAGATATAAAGAAAAATTTAGAGTCTTTTTTGAGTTTTTAATGCCAATTTTACTTACAGCAATGGTAAAGAGAAAAATGAAAGAAGAAGAAGAAGAAGAATATATAGAAAAATATGGTTGACCTCGTCTATTAATTCAAAATGAAAGAAATAAGATCTATCTGTTAAATGGAAATCATGAAAAAACTTAGGCCCCGTTTGGTTTCGTTTTGAGTTTTGTGTTTTATGTTTTCAACATACACTAAAAAAACAAGAAAATGTGGAAAAAATTTTACAATTCTTAGCCATCGCGACGATGGACGGAAAACGGAGGAGATGAATTGTTTTCCATCCTTTTGTTATGTCTCAAAACACGAAAAATCAAATAAACTTGTTTTCTATTTTCTATTTTCTATGTTAGTTTCATTTTTCAAAATTGTGTGTTTTTCAACAATACATAATAAATGCGAATTTTTCTTTAGACGAAAACACAAAACTAAAAATAGCAAACCAAACGGGACCTTATGTTTCGAAAAACAAATCGTTTCTAGCAATGAAAATAGAGATCACAATCAGGTCAGCTAATCACAGGTAAACACGTATAATTTCATTAAATGCTCTGTTATGATAGTTATAACTCCCAGTACCAAATTACCCTTGACAGAATTTAAATTATGCACTTGGCATTTAATCTACTGTATGACTTAGAAAAGGCGAGTTTTTTGGGAGCAAGTGTTCTAGTATATATTACCTAGGGTATTTTTGCGGTATAATTATCCCTTCGACATTAACCATTAAGAATAGAACATCCATTCACTAAGAACTAGGATAAAAGTATTTCATTTCTGTTGATGAAATGCCGAGGGAACTATATACTGAGTTACTTAAGTACATATTTTATCTAATATAAATGCAAATAGAGTTATTCCTTGAAGTGCTCAAAATATTGAAGTATTATTCCTCAAATAACAAACAAATATAGGGCCTAAAATCCAAAACATAAGGACGATGCTCATTAAGTATTCATAAGTACTTAGCAAAGTAAAGGAATATCAACCTAGGAACAAGCTACTTGGATGCATGCAGCAACAATACTATGAAACTATATAATATCGACAATTCAATAGAGACACATGTCATCATCAGGCAAAGCCTCTAGAGAGAGCAATAGGCATCAATAAATAGCACATCATCAATCTACATCATTTACCATGTGGTCATATTGTGACAAGTGTCTTAACACATCCTTCTAACATGACAAGTCAACAATCCGCGACCAAATATTCCCACCAATGAGTGAGCATCAAAACTACAATAAATAAGTGTGGATCCCACAAATATTAAAAAGCAACAATTTAGATTCTAAAATGAAAGAGTACTTTTCTAGATTAGAGAGAATCATAAAACTTGTTATGGGCTTCCAGGATAATTTCCGTGTCTTTGATCAAAACTCTAAATTATAAAAGCACCAACAGTCAATTTATGGTTTCTCCAAAACCACCATAAATCTTGATAGCATTTACTTTAACACATTTAATTTTGACTTTTACATACTTACTTCACATTTACTACCACTGAGCCATTTACTACTTCGGCTTACTTCAAAAACCAAAGCTTTTTTATATAGAAACCAACAATCGATCATCAAACCGACCGTTAGGAAGGTTTGTTTATTGTCAGTTGCTCAAAATAAAATACTCCGAAGCCCAAAACGAAAGGACCCTGTTTTTCATTGTTCGTTCAAAAAATTTCCCTAGATCTCGTCTGTTTCGTCTCCTCCATGTTTTTCGTAGTGTATGTTCAAAAATTTTCCTTACATCTTGCCTATTTCATTTCCTGATACTTATAATACTTTTGATTTCCGAATTTGGAAAGTGATTTACGGGAATGTAGTCCAATAATCTACAGTAGCTTCTTGCTCTTCTTTCCCCCCTTTCTTCCTCGACGATCACTTTAGTTTTTCTTATCTCTTCCCGACATCATAGTCTGTATCTAAATTTCCAATCCAAAGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCTTCTCTAATCAGACTCTACAGTGCATTAACAAAGCTAAGGTTTTGACTAGCATGTATCCGCTTAGGGTTTCAAATCCCGTATAATTCATCATTAAGTTCCCTCCTTTTTCCCTTTTCGCATATGTCGTATCCGTTTTCAAGGCCGAGTTCGAGCTCTTGACTTCATTACATGAATTCCCCTTTTAGCGATTCTTCATCAACTAATGTTTTCTGTGGTGGATTGGCTTGGGAAACTAAGAGCGAAACATTAAGGCATTTTGAGCAGTATGGCGATATTTTGGAAGCAGTTTTGGTTTCTGATAGGAACACTGGAAGATCGAAGGATTATAGTTAGTGGGTATTTCTTTAGTTTGATTATTTGATTTGGTGTTCACATTTCTGTAAGTGTGAATATTTCTGTTGCTACATTTTGTTCTTTATGGATTGCTGAAATGCCTTATTACAACATTTTATTAGCATTGTAAATTTAATGTATTCAACAATATTTAACAAGTGTCATAACTGATCACTCAACAATCAAATTTTAACATTATAGAACATGTAAAACAAGAGTTTGTGACATTCATACTTTGTTAAAACGCGAGTTTGTATTAATTTAGGTTGTTAAACCAACGAAACCATACAGACCTATTGCTGATATATGGAGTCTTGTATGCACGGTTATTGAAATGTTAACTCAACGGCTTCCATTTCCTGATACTGAGTGGGTTAGTAATATGACACATTGTCTTATTTTTGCTTGTATTGTTGATAAAACAATTTACAAATACATCTTTATTAATCAAATTATTATATGTGTATGTATGTTTGTGCATACGATGACACTATTTAAATTATAATGCTATTTGTATCTTAATTTAGTTCATTAGATTCATTCAATCAATGTCTATTATTAACGTTGATCACCTTTTTCTTGCTGATTATCATATGTTAGGATCAGTAATAATTACTAGTATATTCAGTATAATGAATCATATTTAGATGCAGATGGTATACTGCATTTGTGAGAAACTTGATGAATCGTTCACGGTTCACCTATAGGTTTATTTTCCTTTGAAATAAATTAATCTGTTGTATTACATTCAACTTGTCTACTTGGAGGGTGTTGAAACTTTGATTGTATATGCATTTCTGTGAAAATGATATTCATGCATATCAAGTTGAATCGTTCACCTATAGATTTATTTAACCAGTTTTATTTTCAACACATGCTGTTTGTTTGATTAATATTAAAACGTGGAAAAAGTTGTTTTAGTGAGGTTTGCTTGTTACACAGCATAGCTTTGTACAAAACCTTTTTCTAGTCTAATAAGCTTTTTCCCCCAATTTAAACATAATTAAAACATGTAATATGGTGAAACTTTGATATTGAAAGCTACTATTATATTATTTATACATCCAAAAACATGTGCATCAAGAGACGGCATATGCACTTAGCTCTGTTTTTACAATTGAAATTGGATAACTGAGAGTCTAGGCATATAAAACTTTGTAAATAAGAGCTAGGTTATAAGTTCAGGGTCATTCATACATGCATGTGCACACACACGGATATAGACACACACACACACTTTGAGGAACACTGTATGTGTCTATCTACACACGCGTCCGCTTTGAGGAAATATGCGACCATTGACATATACTCCGAGTAAATTATTAGGTTAACAGTTACAACTGCCGGTTGCAAGATCCGAACTTGTGACATTTATCTATTGCCATTGCTACAAATCAACTATATATGTATATCACCTACTGTATTAATATTTTACTCTTTTGGCAACTGCAGATTCATGTACTTTACAAGGTTGGGAAGGGCGAGGGACCTCCAATACCAAACGATCTTTCTGAAGACACACGTGCCTTCATTGTCCAATGTGTACAGTCGAATCTGGGAAAAAGTTCCACTTCATCGCAGCTTCTAGAGCACCCATTCATAAAAAGGCCCCTCTCTTTTCATTCTTCGCTATCTCGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273128.1	1.7e-29	LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1-like
Swissprot	A9SY39.2	7.0e-20	MAP kinase kinase kinase 1a
trEMBL	A0A5P1FF01	3.6e-29	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G08500.1	43.16	9e-20	92.4	ARAKIN;ATMEKK1;MAPKKK8;MEKK1	MAPK/ERK kinase kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G01475	AT4G08500.1	95	52	1	43	135	497	591	43.16	9e-20	92.4
AfisC3G01475	AT4G08480.1	120	70	2	19	134	639	758	38.33	1e-19	92.0
AfisC3G01475	AT4G12020.2	96	50	1	43	135	1786	1881	44.79	1e-17	85.5

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC3G01475
Allium sativum	Asa6G04510.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g53040.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	43	131	40.2	2.2e-10

Gene Ontology

Accession	Ontology	Name
GO:0000166	F	nucleotide binding
GO:0000186	P	activation of MAPKK activity
GO:0005515	F	protein binding
GO:0000747	P	conjugation with cellular fusion
GO:0000911	P	cytokinesis by cell plate formation
GO:0000915	P	actomyosin contractile ring assembly
GO:0001558	P	regulation of cell growth
GO:0003006	P	developmental process involved in reproduction
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0004709	F	MAP kinase kinase kinase activity
GO:0005634	C	nucleus
GO:0009653	P	anatomical structure morphogenesis
GO:0009941	C	chloroplast envelope
GO:0010225	P	response to UV-C
GO:0010467	P	gene expression
GO:0022622	P	root system development
GO:0031347	P	regulation of defense response
GO:0032212	P	positive regulation of telomere maintenance via telomerase
GO:0043167	F	ion binding
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043507	P	positive regulation of JUN kinase activity
GO:0043622	P	cortical microtubule organization
GO:0044702	P	single organism reproductive process
GO:0048869	P	cellular developmental process
GO:0050793	P	regulation of developmental process
GO:0051973	P	positive regulation of telomerase activity
GO:1900745	P	positive regulation of p38MAPK cascade
GO:1902065	P	response to L-glutamate
GO:1904355	P	positive regulation of telomere capping

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network