result

Gene information

Detail information of AfisC3G01517

Location

Gene	Chr	Start	End	Strand
AfisC3G01517	chr3	272333507	272334620	-

Sequences

CDS

Protein

Gene

>AfisC3G01517
AATCGTGTCCTCAGAAACCGCAACCATGTCATCGATCGCATCAATTGTCCCACACCCCACGCGCAAGCGATCCAAAATCAGAAGCGAAGAGGAGCATTTAGCCATGTCGCTCCTCATGCTCTCCCGCGGCACCCCCCTCGACGACGAACTTCACAAGTGCCCCCTCTGCGGAAAAGGGTTCAACTCCTACCAAGCTCTAGGCGGCCACAAGGCCAGCCACCGCAGCAACAAACTCATGGAAGACAAGTCGCAGAATGACGAAACTGCCCCTGGATCGGAATCTTCTGGAAGGGCGCATCGCTGCTCGATTTGCTTAAAGACGTTTCCGACGGGGCAGGCGTTGGGTGGGCATAAACGCTGCCACTACGAAGGCGTTATCAAAACTAGTAAGGTCGGTAAAGGCGCTGCATGTTCCAGCGAAAGTAGAAGTGAGGTGACGATGATCAGTGCTACCAGTGCTACTGCTAGGACGAGTGGTAGAGGGGTTGATATCGATCTGAATATGCCACCAGCGGTGCCGGAGTTTGAATTTGACAGTTGTTTTAGGGCTGACGAAGAGGAGGTTCTCAGTCCTCTAGCTGTCAAGAAACCCAGATCTTTTGTGCATGCTTGAAATTTTGTTGTTAGTTTGGTAAATTCTGGGTGCTCTGCCTTTACTGTTTAGCTAGCGTTGTGTACAGATTGTATCATTCTCTTTTTACTTTTTGTAAGCTCTGTTTTTTTCTTAACTGTGTTACTTGCTTCTGCTTGTGCGAAGAAAAAAGGGTTAACGTATCATTGTTTTTTATCACACACTAACACATACATATATAGCTGATTGCTTTGAAGAATGTAATGTAATTCTATCTCAGTTACTAAAACTTTAATGGCACATGCATCAACAATGAAAACAAAAGTGAATCACGCATTTTCGCTGATGTTAGTATATACCTTTATGAAGTATATGGAAAAAGAACGATACAATCGATTAATTCTATTACTAGTCTAATGCTTCTTTGTAATACGCATGTTTGATAAAGAAGAGGATTAAAGTTGAGGCATAGTGTAAATAAAATCGTAGTGTCATTTTACAGTATACGCAAAAATTTCATTATATAATTTTTTTTATATCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020598892.1	9.2e-10	zinc finger protein ZAT10
Swissprot	Q9SSW1.1	1.1e-07	Zinc-finger protein 1
trEMBL	A0A8J5IQS7	1.9e-12	Zinc finger protein ZAT10

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G27730.1	40.86	4e-27	117	STZ;ZAT10	salt tolerance zinc finger

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G01517	AT1G27730.1	186	78	8	20	190	50	218	40.86	4e-27	117
AfisC3G01517	AT3G19580.2	198	79	7	20	189	66	254	41.41	2e-26	115
AfisC3G01517	AT3G19580.1	198	79	7	20	189	66	254	41.41	2e-26	115

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13912.3	zf-C2H2_6	Domain	43	67	46.5	2.1e-12
PF13912.3	zf-C2H2_6	Domain	90	115	49.8	2e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0009409	P	response to cold
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042538	P	hyperosmotic salinity response
GO:0043565	F	sequence-specific DNA binding
GO:0044699	P	single-organism process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network