result

Gene information

Detail information of AfisC3G01765

Location

Gene	Chr	Start	End	Strand
AfisC3G01765	chr3	312259881	312261965	+

Sequences

CDS

>AfisC3G01765
ATGGAGAAAACAATCATCTCCATAACAATCTCCTTCCTAATTCTCATCAGTGTCACTCTCACAAACACTCAAAATGATGGCATAATCATAACCGAACAAGACTACAACGGGTTACAAGCATTCAAGCACTCAATCTCCGACCCAAACGGCTTTCTAAAAACCTGGAATGGCACTGGCATTGGTGCATGCTCAGGTCTATGGATAGGAATCAAATGTGTACAAGGCAAAGTTATAGCAATCTCCCTCCCATGGAGAGGATTAAGTGGTCAAATCACTGAAAAGATTAACCAGCTCGATGCATTAAGAAAGCTAAGCCTTCATGATAATGCCATTAGTGGAAGGATACCAACTAGTATTGGATTTCTTAAAGATCTTAGAGGTGTTTATCTCTTCAATAACCGCCTCTCGGGTTCCATACCACCTTCAATTGGTAACTGTCTTGTGCTTCAAGCTCTTGATCTTAGTAACAATTTGTTCATTGGAAGTATTCCTTTGACCATTTCCAATTCTAGTAAGCTTTTCAGACTAAATCTTAGCTATAACAATCTCTCGGGTTTGATACCTGAAGAAATTGGAAGGCTTTCGAGCATTAGAGTTCTTGATTTATCACATAATAACTTTGTTGGTGAAATTCCAAACTCGCTTGAGCGTTTAGTGAATTTAACCACATTTGATGTCTCCTATAACAATTTGTCGGGGAATGTACCTCTAATTCTTTCTAAGAAGTTCAATGTGAGTTCTTTTGTTGGTAACATTAATCTTTGTAGATACAGTGCATTAGCACACTGCAATGATTCCAACATTCCTTCTCAATTCACTGCTTCCACATCTGAACATCGCAGATTCAGCTTAAAATTTATAGTTATGATCGCCTCGGGTGCAGCCATTGCAACTCTCTTTGTGATTTGCAGCATTCTATTATGTTATTTACTTCGACAAAAGAAGACAATTGTTAGTGAGAAAACAACCAAGGAACTACCTGTTCCAGAAGCAAAAACTGAAACAACTGAAAAAAGCAGTGGAAAGTTGGTGCATTTCAATGGGGTTGATGCTGCATTTGCTGCAGATGATCTTTTATGTGCAACTGCAGAGATTTTGGGGAAAAGCACTTATGGAACGGTCTATAAAGCAATGTTGGAAGATGGAAGTGAAGTGGCAGTGAAAAGATTGAGAGAGAAGTATACAAAAAGTGCCAAGGAGTTTGAAATGGAAGTGAATATGCTTGGAAAAGTCAGGCATATGAATGTGCTTGAGGTTAGAGCTTATTATCTGGGGCCTAAGGGTGAAAAGTTGCTTGTGTTTGATTTCATGAGCAAAGGAAGTCTTGCATCCTTTTTACATGCTAGAGGACCCGAATCAACCATAGATTGGCGAACACGATTAAACATCGCGAAAGGCGTAGCTCGCGGCCTCAACTACCTCCACAACACGACGAACACGATCCATGGAAACCTAACGAGCAACAACGTCCTCCTAGACGAAAACAAGAACCCTAAAATCGCGGACTTCGCCCTCCATCGTTTAATGACGCCCGCGGCCAACTCCAACGCTGTGGCCGCCGCGACCGCACTAGGGTACCGTGCGCCCGAGCTCCACAACATGAAGAAGGCGAACGCGAAGACCGATATTTACGGATTTGGGGTGGTGTTGCTCGAGCTGATAACGGGGAAGTCTCCGAGTGGAGCAATGAAGGACGGGGTGGAGCTAGCGGCGTGGGTTAAGGAGGTGGTAAAGGAGGAGTGGAGCGTGGAGGTTTTCGATGTGGAGTTGGTAAGGGAAGCGGAGAAAAGGGATGAGATGGTCGAGGTTTTGAAGTTGGCTTTGGAGTGCGTGGATGCGGGTCCCGGGCGAAGGCCCAACGTGGATGATGTTTTGAAGAGGTTGGAAGGTTTGGGCGGCGGCGGTGTCGGAACATCCATTGAGGGCGGTGGAAGTGATGGTTAG

Protein

Gene

>AfisC3G01765
TCACAATGGAGAAAACAATCATCTCCATAACAATCTCCTTCCTAATTCTCATCAGTGTCACTCTCACAAACACTCAAAATGATGGCATAATCATAACCGAACAAGACTACAACGGGTTACAAGCATTCAAGCACTCAATCTCCGACCCAAACGGCTTTCTAAAAACCTGGAATGGCACTGGCATTGGTGCATGCTCAGGTCTATGGATAGGAATCAAATGTGTACAAGGCAAAGTTATAGCAATCTCCCTCCCATGGAGAGGATTAAGTGGTCAAATCACTGAAAAGATTAACCAGCTCGATGCATTAAGAAAGCTAAGCCTTCATGATAATGCCATTAGTGGAAGGATACCAACTAGTATTGGATTTCTTAAAGATCTTAGAGGTGTTTATCTCTTCAATAACCGCCTCTCGGGTTCCATACCACCTTCAATTGGTAACTGTCTTGTGCTTCAAGCTCTTGATCTTAGTAACAATTTGTTCATTGGAAGTATTCCTTTGACCATTTCCAATTCTAGTAAGCTTTTCAGACTAAATCTTAGCTATAACAATCTCTCGGGTTTGATACCTGAAGAAATTGGAAGGCTTTCGAGCATTAGAGTTCTTGATTTATCACATAATAACTTTGTTGGTGAAATTCCAAACTCGCTTGAGCGTTTAGTGAATTTAACCACATTTGATGTCTCCTATAACAATTTGTCGGGGAATGTACCTCTAATTCTTTCTAAGAAGTTCAATGTGAGTTCTTTTGTTGGTAACATTAATCTTTGTAGATACAGTGCATTAGCACACTGCAATGATTCCAACATTCCTTCTCAATTCACTGCTTCCACATCTGAACATCGCAGATTCAGCTTAAAATTTATAGTTATGATCGCCTCGGGTGCAGCCATTGCAACTCTCTTTGTGATTTGCAGCATTCTATTATGTTATTTACTTCGACAAAAGAAGACAATTGTTAGTGAGAAAACAACCAAGGAACTACCTGTTCCAGAAGCAAAAACTGAAACAACTGAAAAAAGCAGTGGAAAGTTGGTGCATTTCAATGGGGTTGATGCTGCATTTGCTGCAGATGATCTTTTATGTGCAACTGCAGAGATTTTGGGGAAAAGCACTTATGGAACGGTCTATAAAGCAATGTTGGAAGATGGAAGTGAAGTGGCAGTGAAAAGATTGAGAGAGAAGTATACAAAAAGTGCCAAGGAGTTTGAAATGGAAGTGAATATGCTTGGAAAAGTCAGGCATATGAATGTGCTTGAGGTTAGAGCTTATTATCTGGGGCCTAAGGGTGAAAAGTTGCTTGTGTTTGATTTCATGAGCAAAGGAAGTCTTGCATCCTTTTTACATGGTGAGCTTTTGTGCATTCATATTTCTCATTTTTATCCAATGTTTATGCCTATTTGGATATAATATAGATTTGTGTCCTAAAGCAATTATCTCGGTTTAATTTCGATGAAAATCAATTAATTTTGAAAATTTTACAGCTAGAGGACCCGAATCAACCATAGATTGGCGAACACGATTAAACATCGCGAAAGGCGTAGCTCGCGGCCTCAACTACCTCCACAACACGACGAACACGATCCATGGAAACCTAACGAGCAACAACGTCCTCCTAGACGAAAACAAGAACCCTAAAATCGCGGACTTCGCCCTCCATCGTTTAATGACGCCCGCGGCCAACTCCAACGCTGTGGCCGCCGCGACCGCACTAGGGTACCGTGCGCCCGAGCTCCACAACATGAAGAAGGCGAACGCGAAGACCGATATTTACGGATTTGGGGTGGTGTTGCTCGAGCTGATAACGGGGAAGTCTCCGAGTGGAGCAATGAAGGACGGGGTGGAGCTAGCGGCGTGGGTTAAGGAGGTGGTAAAGGAGGAGTGGAGCGTGGAGGTTTTCGATGTGGAGTTGGTAAGGGAAGCGGAGAAAAGGGATGAGATGGTCGAGGTTTTGAAGTTGGCTTTGGAGTGCGTGGATGCGGGTCCCGGGCGAAGGCCCAACGTGGATGATGTTTTGAAGAGGTTGGAAGGTTTGGGCGGCGGCGGTGTCGGAACATCCATTGAGGGCGGTGGAAGTGATGGTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274865.1	2.0e-117	probable leucine-rich repeat receptor-like protein kinase IMK3
Swissprot	C0LGP9.1	4.6e-103	Protein MERISTEMATIC RECEPTOR-LIKE KINASE
trEMBL	A0A5P1ECW1	1.4e-117	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G56100.1	50.15	5e-172	601	IMK3;MRLK	meristematic receptor-like kinase

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G01765	AT3G56100.1	672	234	10	26	628	52	691	50.15	5e-172	601
AfisC3G01765	AT3G51740.1	567	246	7	87	629	251	806	50.44	2e-144	509
AfisC3G01765	AT3G51740.1	221	94	4	26	241	45	261	53.39	7e-63	238

Ortholog group

Species	Genes
Allium cepa	g210417.t1
Allium fistulosum	AfisC3G01765
Allium sativum	Asa2G01548.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	32	72	28.4	1.3e-06
PF13855.3	LRR_8	Repeat	149	207	33.2	2.8e-08
PF07714.14	Pkinase_Tyr	Domain	363	628	146.8	6.2e-43

Gene Ontology

Accession	Ontology	Name
GO:0022625	C	cytosolic large ribosomal subunit
GO:0005515	F	protein binding
GO:0003729	F	mRNA binding
GO:0005739	C	mitochondrion
GO:0004674	F	protein serine/threonine kinase activity
GO:0007169	P	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0046658	C	anchored component of plasma membrane
GO:0005524	F	ATP binding
GO:0005774	C	vacuolar membrane
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009570	C	chloroplast stroma
GO:0009610	P	response to symbiotic fungus
GO:0009737	P	response to abscisic acid
GO:0009834	P	plant-type secondary cell wall biogenesis
GO:0010069	P	zygote asymmetric cytokinesis in embryo sac
GO:0046777	P	protein autophosphorylation
GO:0090406	C	pollen tube
GO:2000605	P	positive regulation of secondary growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20359	RABAC1, PRAF1; PRA1 family protein 1	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network