result

Gene information

Detail information of AfisC3G01820

Location

Gene	Chr	Start	End	Strand
AfisC3G01820	chr3	319963423	319965220	+

Sequences

CDS

>AfisC3G01820
ATGAGTTGCTTCTCATGTTTCTCGACGAATTCAAGAAAATCATCGAAAAGGATCGAATATTCACCATCTCCAGCACAAAGAAGAGAGTATGCACCAGTTGCACCTGGTCCTAAACCGTCATCTGTTCCTAACGAGGACGATGATTTAAATCAAAAGCCCCATGAAGAGGCACAAAAACCTGCACAAGAAACAGAATCAAATAATGAAGGAAATGGAAACATTGATGCGAAGACATTTACATTTCGTGAGCTGGCTTCAGCCACTAAGAATTTTAGGCCTGAATGCCTTATAGGAGAAGGTGGATTTGGACGAGTTTATAAGGGCCAGCTGGATAATGGACAACTTGCTGCTGTTAAACAACTAGACAGAAATGGATTCCAAGGAAACAGAGAGTTTCTAGTAGAGGTTTTGATGCTTAGTCTACTTCATCATCCAAATCTTGTTAACCTTATTGGATACTGCGCAGACGGAGATCAGAGACTTTTGGTTTACGACTTCATGCCTCTTGGTTCATTAGAGGATCATTTACTAGATATCACAGACAAGCAAAAGCCATTGAGCTGGTCGATAAGAATGAAAGTAGCATATGGAGCAGCTAAAGGTCTTGAATATTTGCATGAAAAAGCAAACCCACCAGTTATTTATCGAGATCTCAAATCATCAAACATATTACTAGACGAAGAATATAACCCGAAATTATCGGATTTTGGGTTAGCCAAACTAGGCCCTATGGGGGAGGCTTTGCATGTTTCATCAAGAGTTATGGGGACATATGGCTATTGCGCACCTGAATATGCAAGAACTGGTCAGCTGACATTGAAGTCTGATGTGTACAGTTTTGGAGTTGTTCTACTTGAGTTGATTACTGGTAGACGAGTTATCGATACTCTCAAGCCCATGCATGAGCAGAACCTAGTAACTTGGGCACAACCAATGTTCAAAGACCAAAACCGTTATGTAGAACTAGCAGACCCGCTACTTAGAGGAAAATTCCCAGTCAGGGGTCTAAACCAAGCAGTTGCAGTAGCTGCAATGTGCCTTCAAGAAGATGCATCTGTTCGTCCAATGATGACAGATGTCGTCACTGCATTGAGTTTCCTCCTTACTGATCCAAAATCATATTCTGAAGAGAGCTCGGCTCAGCCTACGCCAATTCATTCACATCATGATAGTAGAACAAGTGATGACTGTGGTAGCGTATTAACTGGAGATGATGTGGTCAGTGAACGTGAGCGTATTGTTCAGGAAGCTATTCAGTGGGGTGAAAGTTCGAAGCAGCACAATCCTTCAGTGGAACATGTGCAGATTAGTGAGATGGTTTAA

Protein

Gene

>AfisC3G01820
GAAATTCAATACATCATCAGTGCTTGGTGCATCGATTCCAAACATCCTATACAGATACATTCTTTGTTTTGTAGAGAGATGAGTTGCTTCTCATGTTTCTCGACGAATTCAAGAAAATCATCGAAAAGGATCGAATATTCACCATCTCCAGCACAAAGAAGAGAGTATGCACCAGTTGCACCTGGTCCTAAACCGTCATCTGTTCCTAACGAGGACGATGATTTAAATCAAAAGCCCCATGGTACTATTCTTTTTCTGCTATCATTTGAAAGGCATATATCGTTTTATATATAGCCTGTGAACTCATATTTGATCAATGTGCAGAAGAGGCACAAAAACCTGCACAAGAAACAGAATCAAATAATGAAGGAAATGGAAACATTGATGCGAAGACATTTACATTTCGTGAGCTGGCTTCAGCCACTAAGAATTTTAGGCCTGAATGCCTTATAGGAGAAGGTGGATTTGGACGAGTTTATAAGGGCCAGCTGGATAATGGACAAGTATAAAAATATACCTATATATCAGTGCATATTCATCATTTTATATATCTCATATCTGATAAAAGTTTTCTTTTTCTTTTTTATTAACTAGCTTGCTGCTGTTAAACAACTAGACAGAAATGGATTCCAAGGAAACAGAGAGTTTCTAGTAGAGGTTTTGATGCTTAGTCTACTTCATCATCCAAATCTTGTTAACCTTATTGGATACTGCGCAGACGGAGATCAGAGACTTTTGGTTTACGACTTCATGCCTCTTGGTTCATTAGAGGATCATTTACTAGGTCAACAACATACAATTTCTTTAGGATATTTGTTCAATTCTCTTAATGTGATATCTGTGTGTATTAACCAAATTAACATATGATTTCCTTGCAGATATCACAGACAAGCAAAAGCCATTGAGCTGGTCGATAAGAATGAAAGTAGCATATGGAGCAGCTAAAGGTCTTGAATATTTGCATGAAAAAGCAAACCCACCAGTTATTTATCGAGATCTCAAATCATCAAACATATTACTAGACGAAGAATATAACCCGAAATTATCGGATTTTGGGTTAGCCAAACTAGGCCCTATGGGGGAGGCTTTGCATGTTTCATCAAGAGTTATGGGGACATATGGCTATTGCGCACCTGAATATGCAAGAACTGGTCAGCTGACATTGAAGTCTGATGTGTACAGTTTTGGAGTTGTTCTACTTGAGTTGATTACTGGTAGACGAGTTATCGATACTCTCAAGCCCATGCATGAGCAGAACCTAGTAACTTGGGTAAGGTTTTTCAGAGTTCATCTTCCATTATGACTAGTTTGAAATTTTAGCAATAACTTGTTCAAATATTTGCTTATTTCAGGCACAACCAATGTTCAAAGACCAAAACCGTTATGTAGAACTAGCAGACCCGCTACTTAGAGGAAAATTCCCAGTCAGGGGTCTAAACCAAGCAGTTGCAGTAGCTGCAATGTGCCTTCAAGAAGATGCATCTGTTCGTCCAATGATGACAGATGTCGTCACTGCATTGAGTTTCCTCCTTACTGATCCAAAATCATATTCTGAAGAGAGCTCGGCTCAGCCTACGCCAATTCATTCACATCATGATAGTAGAACAAGTGATGACTGTGGTAGCGTATTAACTGGAGATGATGTGGTCAGTGAACGTGAGCGTATTGTTCAGGAAGCTATTCAGTGGGGTGAAAGTTCGAAGCAGCACAATCCTTCAGTGGAACATGTGCAGATTAGTGAGATGGTTTAATATGATATGGTGTACTTATTGCTGTTGCTATAATTGTTGAAATTATG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020265940.1	1.5e-161	probable serine/threonine-protein kinase PBL25 isoform X1
Swissprot	Q9SFT7.1	1.6e-139	PBS1-like protein 26
trEMBL	A0A5P1ES43	3.4e-155	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G07070.1	62.01	1e-146	516		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G01820	AT3G07070.1	437	134	8	1	430	1	412	62.01	1e-146	516
AfisC3G01820	AT3G24790.1	321	79	2	53	367	4	324	73.52	7e-140	494
AfisC3G01820	AT5G13160.1	445	171	5	1	426	1	440	56.18	8e-139	490

Ortholog group

Species	Genes
Allium cepa	g200941.t1
Allium fistulosum	AfisC3G01820
Allium sativum	Asa2G02886.1
Arabidopsis thaliana	AT3G24790.1
Oryza sativa	LOC_Os05g03460.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	96	361	155.5	1.5e-45

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0040007	P	growth
GO:0007166	P	cell surface receptor signaling pathway
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009941	C	chloroplast envelope
GO:0010183	P	pollen tube guidance
GO:0035420	P	MAPK cascade involved in innate immune response
GO:0046777	P	protein autophosphorylation
GO:0071323	P	cellular response to chitin
GO:0090404	C	pollen tube tip
GO:1900150	P	regulation of defense response to fungus
GO:1900426	P	positive regulation of defense response to bacterium
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13430	PBS1; serine/threonine-protein kinase PBS1	EC:2.7.11.1	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network