result

Gene information

Detail information of AfisC3G01948

Location

Gene	Chr	Start	End	Strand
AfisC3G01948	chr3	341350915	341352663	-

Sequences

CDS

Protein

Gene

>AfisC3G01948
AATAAAAAATAAATAAATAAAAATAAATGGGGAGATCACCATGTTGCGAGAAAGCACATACAAATAAAGGAGCATGGACAAAGGAAGAAGATGATAGATTGATAGCCCACATAAAAGCACATGGTGAGGGTTGTTGGAGATCACTTCCTAAAGCCGCCGGTCTTCTTAGATGTGGCAAGAGTTGCAGGCTTAGATGGATTAATTACTTGCGCCCTGATCTTAAAAGAGGAAACTTTACTGAAGATGAAGATGATTTGATCATTAAACTTCATAGCTTGCTTGGCAACAAGTATGTTCTCTCTGCTCTTTTAAATACGTACCCTTTCCAGTTAGTTTTTAGCTTGTGTTCATCGGGGTTGAAGAGCTATCTTAGAAGTTCAAATCCAGATTAAATTAAGTTGGTGTCAAACATAAGCAAACCGATATGTGTATGAACAGACTATTTTTTATTTTATGTGCATAAGTGAGTTTCTAGATTTTAACTTGTGATACTTAAACTAGCAAAAAAGATCCATAAGGTTAGAGAGTCTACTTTTCAAGCCACAAAGAGTTAGGTATGTTTGAAAAGTTGTATTTGTTTAGTTGTTTAATTAGTGTTCTAAACTGAGATAAACATCTAGAACTGCAATAATTGTCATAAATAATGTGTAGTACTTATTGCAAAAAGTGCTGATTGGTTTTGAGCACTTTTGTAGAACAATATCGTGTATCCTTGCTCAAATTGATATACACAAAATTACTTCTATAGGTGAGTATATAAATTAGAAAAGAAAAAAAAGATGTTACCAAAATGTTTGTTAAATCAAATATATTTAAAATGTTTAAATTCCTACTTTTTACATTGTAGCACAAGTTTCTCTATGTTATAAAACAGACTATTCTAAGCTAAAATAAACACTAACGTTTGTGAATTATCGTTGCATCAGATGGTCGCTAATAGCAGGAAGATTACCGGGAAGAACAGACAACGAAATCAAGAACTACTGGAACACACACATAAGAAGAAAGCTGCTAAGTCGAGGCGTGGACCCAAACACTCATCGCCCAATAGTTGAAGGCGTTTCTTCGAACATAACCACCATTTCATTCGAGAAAACACAGGAAGATAAAAGTAGCAGCGAAGAATCCTTCTCTTACTCGAATCCACATTATAGGATCCCCGATCTCAATTTGGAGCTCCGAATAAGTCCACCCTTCCAACCGCATTTTGAACCCGTTAAAACCGAAATAGGACTTGGTAATAACCATGTCGGTGATAGTTTTCTTGGATTCAAGAAAGGAGTGCTAGACTATAGAACAATCTGAACATTTGAAGTTGCATATATCCAAATCCTCATTTTGTAATATAAGTTTGTGTTACTTCACTTGTAAGTAGTAATTTACATTGGAAAAGTAATTTCACGTGTTGTTACCTTATTTTGCTGTTGGTTCATGTTATATTTTAGCAATTTTCAAGCTAATGGACATAGTAAAGTTTTGTTATAAGTTGGTGAGTGAGATGCATAGAAAAAGACAAGAAGATATATAGATTGTGATGAATAATGGAGGAGTTTGTTTGGGTAGGTTTCAGATATTGTTGGTATATATAAAAAAATAAAAAAGTTTATGGTTGTGGTCCTTTCATATTCAATTGGACCGAATTTAGATAAGAAGATAGATATTGTGAAGTGCAAGCAACTTGATAAATGACATTTTGTGGGAATCACATCTTCAAATTTGACCAACAGTTTTGCAAGTGTTGTGTCAAAG

Functional annotation

Database	accession number	e-value	annotation
nr	AQP25673.1	3.6e-124	MYB transcription factor
Swissprot	P81393.1	9.0e-80	Myb-related protein 308
trEMBL	A0A1S5VIC9	2.6e-124	MYB transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38620.1	67.79	1e-74	275	ATMYB4;MYB4	myb domain protein 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G01948	AT4G38620.1	208	35	3	1	177	1	207	67.79	1e-74	275
AfisC3G01948	AT2G16720.1	268	63	6	1	213	1	266	55.22	6e-73	270
AfisC3G01948	AT4G34990.1	196	46	2	1	179	1	196	67.86	1e-71	265

Ortholog group

Species	Genes
Allium cepa	g7547.t1
Allium fistulosum	AfisC3G01948
Allium sativum	Asa0G05858.1; Asa2G01635.1
Arabidopsis thaliana	AT2G16720.1; AT4G09460.1; AT4G38620.1
Oryza sativa	LOC_Os01g50110.1; LOC_Os01g65370.1; LOC_Os05g35500.1; LOC_Os08g43550.1; LOC_Os09g36730.1; LOC_Os12g07640.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	53.8	1.4e-14
PF00249.28	Myb_DNA-binding	Domain	67	111	60.2	1.4e-16

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0001944	P	vasculature development
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009845	P	seed germination
GO:0009909	P	regulation of flower development
GO:0010089	P	xylem development
GO:0010091	P	trichome branching
GO:0010119	P	regulation of stomatal movement
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0048364	P	root development
GO:0080091	P	regulation of raffinose metabolic process
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network