result

Gene information

Detail information of AfisC3G01992

Location

Gene	Chr	Start	End	Strand
AfisC3G01992	chr3	350444655	350447390	+

Sequences

CDS

Protein

Gene

>AfisC3G01992
ATGGCGAGATTACAAGGCTCAGTCAGATGGTTCGACAATACCAAAGGTTACGGATTCATAAGCCCTGACGACGGATCCGAAGACCTTTTCGTCCATCAGCTCTCCATCAAATCCGAGGGCTTTCGCACTCTAAGCGAAGGCGAAGTCGTGGAGTTCACCATCGCCGAAAGCGATGACAACCGACTTAAGGCCGTCGATGTTACCGCGCCAGGCGGATCTCCTATCCAAGGTAGCGCTCCTCGCAGCAATCGCGGTGGATCCAGCTGCTACAACTGCGGTGAAAGCGGACACATGGCGAGGGACTGCAGCAGCCAGGGAGGTGGCGGCGGCAATCCACGAGGTGGAAGTATGTGCTACACCTGCGGGGGAAGCGGACACATGGCAAGGGACTGTACTAGCAGAGGCGGTGGTGGAGTTGGAGGTGGACGTACCGGATCCTGCTATAACTGTGGAGAGATGGGGCATATGGCGAGGGAATGTGAAAGCGCAGGACGTGGTGGAAGCGGTGGTGGCAATGGAGGCATCTGCTATAACTGTGGGGAGATGGGGCACATGGCTAAGGAATGCAGCATGGCTGGAGGACGAGGTGGTGGTGGAGGGTGCTACAACTGTGGAGAAATGGGTCATTTGGCGAGGGATTGCAATAACAGTCGAGGTGGGAGGAGGAATGTTGATGATCGAAGTGGTGGTGGAGGTTGTTATAGTTGTGGAGAAACTGGCCATTTAGCGAGGGATTGTAGTAATGGTGGAGGTGTTGGGAGGAGGAATGTTTATGATCGAAGTGGCGGTGGAATGAGTTGCTTTAACTGTGGAGAAACTGGGCATTTGGCGAGGGATTGCAGTACTGGTGGAGGTGGAGGTGGAGAAGGGAGGAGGAATGTTAATGATAGAAGTGGTGGTGGGGCTTGTTATAAATGTGGTGAGCCTGGGCATTTTGCACGAGACTGCACTAAGTAAGGTACTGCTTGAGTGTTTCTACTCCGAGAGTTTTGAAGTTTGATTTTTGGTCGTGTCGTTTTATGGTTTATTTTGAATGTTGGATTTGTTGGGAGTTTTGAGCTTATAATTGGCTTTGGATTTGTGCTACCATATGAAAACACTTTGATAATTTTAAAAGTCATTTTGGGTTATGTTAGTGGAGAGTTCTATTATGGTGGTTTTGATTGTTCGGAGTTAATCATGTTGGGAGATTAACTTCATGGTGTGAAATTGAGATCCTTGCATTTTACTATGAATGATTTTCATGATTATATCTATAGTGTTGCAATAAATTCATGGTTTTCTTGATTATATCTATAGTGTAGCAACATATTCCTGGAAATTTCTATTTGAACACAAAGAACCGTCTTACACACTTAAAATATAATTATTTTTTGTGCAAAAGCCGCCTTTGTTTCTCGTCTATTTTTCTAGTAGAAAAAATAAACAAAATTTAATGATGCATCCAAGGGTGTGATGTTGCTTCATATAAGTTGAAAAAAGTGACGGATTCTTCACCATAATGTTTAATTTTTTTGGATAAGGGGCATAATTGGTTGAGGGAAAATTTTGAAGATACAATTTTTTGATAGGGGATAAAGCTAAAGTAGTTTTGATAACAATTATTGATCAAAATACCCTATACATTCTTCCTTTAATAATTTGATGGAAAATGAAAATTTGAAGTTTAGGAAAAAAATTTAGGTTTAAAATTTGAAGTATAAAATGTCAAAATTTTATTGTTTAGAAGTATTAGGTTTTAACTTTATAATATTAAAAATAAAAATTAAGTTGTTTACAACTTCAAAAATGTTCACTTGAAGTCTTTTAAAACTTGTAAAAAAATGAAATTTATGTTTTATTTTTATCAACTACTTATTTTTTGATGTATTTCCTTTAAAGGGTTAGAATGTTATTAACAACTTTTACCAAAGGAAAACACATATTTTGTTCAATGGTGTCATTATCCAATATGGTATTATTCTCATTAACAATTCCCCTAATTTTCGTTGGTTATCTCATGCATTTGGAATAAGGGTAAAAACTTTATTACCAATTGATTATGATCTCAATCTTTTGATCTGAATTTGAATTTCTCAAAATCCTCGAGCATCATATCGATGAGTTCACAGGTTCGAATCTCGGTTATAACAATAATTTGGAGATTTTGGATTATTATTAAGGTCATAGGTTCAAAATATGATAATTCACATTTTTTGTATTGGCATTTTTTGTAATGTTCTCTCATTATGAATAAATTGTACCCATTCTGTGTTTGTTTCATATTTAAGTTTAATGCACAGTTTATTTTTTAAGACAGTTAACTTTCTTTAGATATATTTTATATAAAAATCATCTTTTTCATACTTAAAAAGATATTTAAAAAGATATTACAATTGAACACTATGATTATATGTGCGTGTACATAGTTTCACATTTTTCAATATAGAATTCGATGTTATAAAAATATTTCTAAGAGCATCTCCAACCGTTTACGAATTACGGTTACATAATTTCTAGACTCGATTACAAGTATTTCTCCCAACAGGAAAAGTGGTCTATAGCCTATTTAATAAGCACCGGAGTAAAGTGCCTGTTTAACATGCGCTTGAAAGTCAGCCACTTGTTCAACACATGCTCGAGTCTGGCGTCTATAAAAGGTGCACAACTCTCATTTTTATTCATTTTAATTCTGTGTAAATTCAAAATTCAAATCAAAATGCATCTGAGATCAATGTGAAAAATACGTATCACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	VAH91002.1	4.5e-30	unnamed protein product
Swissprot	Q94C69.1	1.0e-26	Cold shock domain-containing protein 3
trEMBL	A0A7N0ZR89	2.0e-27	Glycine-rich protein 2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36020.1	47.25	3e-57	219	AtCSP1;CSDP1;CSP1	cold shock domain protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G01992	AT4G36020.1	309	115	9	2	282	9	297	47.25	3e-57	219
AfisC3G01992	AT4G36020.1	118	58	2	201	318	102	215	47.46	7e-20	94.7
AfisC3G01992	AT2G17870.1	301	129	7	2	282	9	299	47.18	4e-47	185

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00313.19	CSD	Domain	5	69	81.7	2.2e-23
PF00098.20	zf-CCHC	Domain	88	103	33.6	2.3e-08
PF00098.20	zf-CCHC	Domain	118	133	29.0	6.3e-07
PF00098.20	zf-CCHC	Domain	146	160	31.4	1.2e-07
PF00098.20	zf-CCHC	Domain	175	190	32.2	6.2e-08
PF00098.20	zf-CCHC	Domain	200	215	31.5	1e-07
PF00098.20	zf-CCHC	Domain	232	247	29.5	4.5e-07
PF00098.20	zf-CCHC	Domain	266	281	32.8	4.2e-08
PF00098.20	zf-CCHC	Domain	302	318	35.8	4.6e-09

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0001072	F	transcription antitermination factor activity, RNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003697	F	single-stranded DNA binding
GO:0003729	F	mRNA binding
GO:0051087	F	chaperone binding
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005507	F	copper ion binding
GO:0005524	F	ATP binding
GO:0005730	C	nucleolus
GO:0006396	P	RNA processing
GO:0009269	P	response to desiccation
GO:0009631	P	cold acclimation
GO:0009651	P	response to salt stress
GO:0009737	P	response to abscisic acid
GO:0009826	P	unidimensional cell growth
GO:0009845	P	seed germination
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010501	P	RNA secondary structure unwinding
GO:0031047	P	gene silencing by RNA
GO:0031564	P	transcription antitermination
GO:0032508	P	DNA duplex unwinding
GO:0034660	P	ncRNA metabolic process
GO:0043457	P	regulation of cellular respiration
GO:0048316	P	seed development
GO:0048443	P	stamen development
GO:0060567	P	negative regulation of DNA-templated transcription, termination

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09250	CNBP; cellular nucleic acid-binding protein	EC:-	-	-
K03704	cspA; cold shock protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network