result

Gene information

Detail information of AfisC3G02002

Location

Gene	Chr	Start	End	Strand
AfisC3G02002	chr3	352520932	352522992	-

Sequences

CDS

Protein

Gene

>AfisC3G02002
CAACGCACCAACAATTTCTAATGCTTATAAGCTGGTGTGTACGAGGGCAAAAGATACATTTTCTCAGAAGTTCATATATCTAGATTGGTTTGTCTGGTTTTTAGAATTTACCTTTTGAAGAAAAAGATAATTTTTTGTCAATATGTACACATACTATATAATACTCATATATTCTAGTCCTGGCAGAAACAACTAAGAACCATCCTTCTCAAACCATCTTACATAAATTATCCATCCCTCATACTATCATAACATTCACTGTCATTTGTTTAATTTCTAGTTGATTGTGCAAAAGAGAAAAGGAGGAAAGAAAATCAAATTAAAGCTCACATGGATATTACTCAATGGACACAGGTACACACAAAACTAATCTCATAACCATCTTATATTTGCGTACTACTGATATATTGTTCATAAATCTTAATTGTACAATTTCTCTCTTTTTCGCTATGGTTGAGTTAGTCATTTAGACCTCTTTAGCACTTTGCAATCAAAGCTACTTTAATTTCTCAAAAGAAATAAAAGTGTTAAGATCTGTCACTTTGCTTATTTTCGATTTCATCAATTTCTACCTTTTAAACCTTGCTGTGATTAAAAGAAGTGTCATGATAGGTTCTAGTGATGCACTAAGCAGTCACTTTTTTTTTTCTAATTAATTTTAAAAACTTTGATTTATTGGTTGAATGCTTGTTGTTCACTCAATTTTTTGTTATTGTTTTTTCTTTATAACTCCAACCTTATTTTATATTCAAGGAAAATTTTCTTTTCTTTTTGATGGTAAGAATATGTACATGTATTTATATATTTTTTCGAATTTTCCCTCAGTTCATCTGTTTCCAAAGCAATATTCTCAATCTTTTTTTTTATTCACGATAAAACTATATGTAAAACTGCATAAAACTATATACTTTGATAAATTTAAAGTAATTTCATTGCATGGTTCTCCAAGTGGTAAGTAATTTAAATTTGTAGGTTTCTTCAATTACAAACAATAACAATAATGTCACGATACAACCACCACAACAGTCGCAACAATCGGTGGAAAGGAGAACAAAACCGACGAAAGAACAAGCACTACTCAAATGCCCAAGATGCAACTCAACCAACACAAAGTTTTGCTACTACAACAACTACAGTCTTACTCAACCACGATATATTTGCAAGGCTTGTAAACGGTATTGGACCCAAGGCGGGTCTCTTAGGAGCGTACCTGTTGGTGGAGGTTCTAGAAAGAACAAAAAACATCCTTGTTCAAGCATGTCATCTTCTACTAAAATCAACTACTTTCAACCTACAAACCCGATGATGACATCTTCTTCATTTATGACAAGGCCCCATTATCAAGGGCAAGAACTGAATTTAGGATTTGCATTTGGTGCTAGTTATCCTAATATTGAAAATAGCACTAGTGGTGGGCTTGGAGTTAGTTCTATGGAGCTGTTAAGCAATAGTACAAGTGCAATGTATGGTAATGGTGGTGGAGGTATTAGCACCATTCCTGGCATAAGTTCTAGTAACATTAAGTTTCCATTGAATGGTGTTAACGGTGATCAAGGGATGCAGTTATTTTCTTTTGGTGATGTGGAACGAGTTAAGTGTGATAATGATATTAATGAAATACAAAATAAGGGGTCACAAGGAAGAGATGAATCCATGTTATGGAATGGTGGATCATGGTGAAAATAGTATGAACCTTAATTATATATCAGTTTGTTACCTCAAGTTGATATGGTGTATAGAAGAAAGAAACTCTATCAAAATATCAGTGATAATTGACAGTTTAAGCTTTTGTTTGTATTTATAAGACTAACTAGAATGGCAAGCATTTACGTTTTGCAGTGTTCATCTATTTCATTTATGTGTGGATATTTAATTAGGTTTTGAAGATTCATTAATGGACTGCACGACTGCACGAGTATCAAGATCGCCTTGATGTTCCTTTGTAATTTTGTTTTTTCTTTTCTTTAATACGGCATATATACGAAGAGCTTGTACAATTTGAAGGTAACTATGTACTATGATATGTAATGTATATGAATGAAAATGACAGTATTATAACTT

Functional annotation

Database	accession number	e-value	annotation
nr	KAF3439832.1	2.5e-33	hypothetical protein FNV43_RR18110
Swissprot	Q9M161.2	1.2e-27	Dof zinc finger protein DOF4.1
trEMBL	A0A8K0DYE6	1.8e-33	Dof-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G24060.1	77.61	1e-28	123		Dof-type zinc finger DNA-binding family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G02002	AT4G24060.1	67	14	1	32	98	42	107	77.61	1e-28	123
AfisC3G02002	AT3G61850.1	269	108	12	1	220	1	251	34.94	3e-28	122
AfisC3G02002	AT3G61850.3	201	92	9	35	220	53	239	39.80	4e-28	121

Ortholog group

Species	Genes
Allium cepa	g101309.t1
Allium fistulosum	AfisC3G02002
Allium sativum	Asa2G01664.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	43	98	114.4	1.8e-33

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0010052	P	guard cell differentiation
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0010227	P	floral organ abscission
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0048364	P	root development
GO:1902066	P	regulation of cell wall pectin metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network