result

Gene information

Detail information of AfisC3G02253

Location

Gene	Chr	Start	End	Strand
AfisC3G02253	chr3	392781529	392783176	+

Sequences

CDS

Protein

Gene

>AfisC3G02253
CTAAGAGCCCACATAAGTTATTCTCTTATATTTGTCAACCTTTGTAGTCTTTTTGGTATTCCAAGCTCTTCATAAAGCTCGTACCTTCAATTCTTTTCTTCTAATAGTAAACATACCAATCTTTCTTTGAATATCTAATTATCAATCATAATCTACTTCTCTCTCATTATAAAGAAGCGTTCTCCACCTATCTTTCCTTCATAAGTTCAAAGAAATACTTGACTATGGATGGATATCAGAGCCTTGATCTTTGTTTAGGATCACAGATAGAATCATCGCATACAACCCAACACCGCCGTCGACAAGTTCCCCTAGAGCCATCTCTTACTTTAAGCATCTCTGATTCTTCTTCATTTTCGAATATTAAGATTGAAAAAGATGAAGAAGTTGAAGTAAACGAAAGATCAGTACTTCCTTCAAGGTCGAACAACGACGAGGAAGATGGAAATGCAAAGAAAAAGCTTAGGTTAACTAAAGAACAATCAGCTCTTTTGGAAGAGAGATTCAAAGAACATAGTACTCTTAATCCTGTGAGTATTATTATGGCATGATTTATTTTGAAATGATTTTATTTACGTTGTTGCCCAATATGATTTTGCTTTCCATTGATGGATCTAGAAGCAAAAACAAGCTTTAGCCAAACAGCTGAATTTAAGACCAAGGCAAGTTGAAGTTTGGTTCCAGAATAGAAGAGCAAGGTTTGCACCACAGTTTGATCTTCTAATTATTAGATTGATTATAACTTCATGGCACACCTTTAAATATAATCAAACCATCATACTTATCCTGCAAATCCAACTATTAAAATGAATATTTGAAAAATGAAGAAAACTGAAACACTGTGAATGTTGTGCCTATACTCTAGAGAAGTGTTGGTGAGCAGTCTGCTTATCATTTTTGAAGGTTGCAGTTGATTATTAAGAGCTTAACATAAATTCAGTGATCAACAGCAAGTGAACTCACACAGGTGCCTGCTTACTAGAAGTGATAAGCTGACTATTCATCAACACTTTTTTTTTTTAATATATGTCTATATATTTGTGGGTAATGTGGAGCTATAATTGACAATAATTAGGACAAAACTGAAGAAAACAGAAACAGACTGTGAATATCTGAAGAGGTGTTATGAGAGTCTAAGTGAAGAAAATCGAAGGCTGCACAAAGAAATCAATGAGCTTCGATCGATAAAAGTATCTCCACAACCTCCACTGACAACACTGACAATGTGTCCTTCCTGTTCAGAGAGAGTCGCCAATGCAGGCAACAAAGGAAAGCCCGGACCTTTTGCGAAGCCACACTTCTTCAATCCCTTTCCCCATTCCACCACATGTTAATTTGAGACTTGTAATTATTATTTTTTGTTTCTTCCTATTTCTAGCTTAGAATTAAGATGTTTTAAGTTTACCCTTAATTAATGTAGCTAGAGGGTATTTAGTAGGGATCATGGACATATGATCAAGAAAATTAAGAAGAGATTACTTGTGAAAACATGCTATATGAAGCATGTCTCTCTTAAATAATATCAACTCTTTTTACATGTGCTAATGGACATTGTTTAGTACTTCTAAAAAACAATTATAATACATGGGAATTCAAAACACCATGAGCGTGGATGTATATAAATAGAAAGAAAAATGTTTGTTTCTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010936202.1	2.0e-50	homeobox-leucine zipper protein HOX19
Swissprot	P46604.1	1.6e-44	Homeodomain-leucine zipper protein HAT22
trEMBL	A0A8K0I7A5	1.3e-51	Homeobox-leucine zipper protein HAT9

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G06710.1	67.81	1e-49	192	HAT14	homeobox from Arabidopsis thaliana

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G02253	AT5G06710.1	146	42	2	50	191	162	306	67.81	1e-49	192
AfisC3G02253	AT4G37790.1	252	78	8	16	214	30	278	46.83	8e-47	183
AfisC3G02253	AT4G16780.1	125	28	2	65	183	115	239	72.80	1e-46	182

Ortholog group

Species	Genes
Allium cepa	g139441.t1; g139442.t1
Allium fistulosum	AfisC3G02253
Allium sativum	Asa2G01817.1
Arabidopsis thaliana	AT2G22800.1; AT4G37790.1
Oryza sativa	LOC_Os03g12860.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	77	131	59.2	2.3e-16
PF02183.15	HALZ	Family	133	165	38.8	6.9e-10

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0008283	P	cell proliferation
GO:0009506	C	plasmodesma
GO:0009585	P	red, far-red light phototransduction
GO:0009641	P	shade avoidance
GO:0009733	P	response to auxin
GO:0009735	P	response to cytokinin
GO:0009826	P	unidimensional cell growth
GO:0010016	P	shoot system morphogenesis
GO:0010218	P	response to far red light
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network