result

Gene information

Detail information of AfisC3G02510

Location

Gene	Chr	Start	End	Strand
AfisC3G02510	chr3	438195904	438197955	-

Sequences

CDS

Protein

Gene

>AfisC3G02510
TTAGATTGCTTAGTCAGATTGTGACCTGGCACAATTTTTACTTTATTCCTCCCAGAAAGCAAATCTCATCGCTTCTATTCCTTTCTGTAATTTATTAGGGAAAAAATAAATTACAAATCGATGGCAGAAATCAGTTCTCTAATCTCCCAATCGGACTTGGAACCTGGAAGACCATCCGTCCCGATTGACACTCGGAAGGTGAAATAGACAGACAGATCCATTTTTGCTGTTTTTTCTGCTCAGTTTACATTAAAATAAGATCTTTGTTGTTTTAAATTGATGATATTTGTTTTAAATGGTACGGGTTTCTTATTTTCAGCTGAATATAGTCTTTGCTAGAGTTATTTGGCTTTGTGGGAATTGGTATGTTTATTTGATTTGTGAAATCCATCGATATGTTTGTTTAATTGGCGATTTAATTATTTGATTTGAGATAATTTCATGAATTCTTGAATCTCAAAAGTGTTCTTCTTTGTTAAAATAATAATTCTATAAAACATAAGGGACTATTTGTGGTTGTTAGAAATTATGATATTATCACTATTAGTGGTTAAATCAAAAAATTCTTTCAAAGTAAACTTTTTTTTTATATATCTCAAAATGAGATTATAGAACAATCTCATGAAATGCACATGTTTGGTCAAGCTCAAGCATGTAGACCAAGCAAAATCAAGTGAACAGATTTTAAATAGCTAATGCAAATAAGCAATAAGGCCTAGTCGATAAATTTGAAGCTAGTGAGAGTGTTTGCTCTGAAGGATGTGTGGTTTCTTGTTATTTTTTGGATAACTGCGCATTTTTTTTGCTACTATCAGAAAATGATAGTATGACTTCTAAATAACCACTTGACGAACATGCAATAAGCTCATGCTATTGATGGACAAGGTAGTCATCATGAATCCCTTGTCTATGCCAAGAAGTCGACTTTTACAGTTCTACTCAAGTTTTTGTGAAAATCAAATGCAAATTGTAAATATTTTTCATGAATTTCCCTTCTAATTATGCACGCTGACTGAAGTCCAACAAATTCTGTAGGATGTTTTAAAGGAGCTCAATCTTCAGACGGAAAAAGTCTCAAAACTGGCTAAGGGTGACAACCTTCGTGATTCTTTGAATTTAAACAATGCAAGCACCGATGATCGTCGATCATCCATTCAAACTGATGAAGTGTTGATCGATTCTAACATCAACAATGATCAATCGAATGACTATAGCATCCTTAAAAGACCAGACAAAATTCTTCCATGTCCTCGGTGCAAAAGCATGAATACTAAATTTTGCTATTTTAACAATCACAACATCAACCAGCCACGGCACTACTGTAAGAATTGCCAGAGATACTGGACTTCAGGTGGGTCTATGAGAAATGTACCCGTGGGGTCTGGGAAGCGAAAATCAAAGCATTCTATCATCTCTGTTGATGAAAACTGCGAAAAGGCATCTACTCCATTATTCATAAATCCTGGCTGCCCTGAAATTGAGAAAACTAGTATAGAACTTCAGAGCACTCAAACTTGCTTTCCTCTTCAGGGCTTCCCAGGTCCACCTTGGGCTTACCCCTGGGCGCTCCCAATGATCATGGCACCGCCTACTAATGTTCCATTTCCATATTTTCCAATGCTTCCAGTATTTTCTAATATGGCAAACATAGGTAATCAATGTAGCAGTGATCAAGGTAAAGAAGAAAAGAAGACTTTCTGGATTCCTAAAACTTTGAGAGTTGATAATCCAGAGGAAGCAGCAAAGAGTTCCATATGGTCTACATTAGGAATCAAGCGAGATGTGTCTGCGAAAAAGCAGTGTCTTTTTCAGAATTTCAGACCAGATGAAGAAAACAGTGGGTGTGGTGCCCCCAATGCTGCTCAAATGTTGTATTCAAATCCTGCTGCATTGGCTCGAAGTAGAACGTTTCAAGAGAGTGCTTAAACTAGTAAATAAGCAATTTGGCATTGTATTTTATGAGCGTTTTAAGATCTCATGCATGTTGTATCATGTTAAAATTTAGATGAATGTACAAAGAAATAATATCAAATCTCCTGCTTGTGTTAAAAA

Functional annotation

Database	accession number	e-value	annotation
nr	ATG31851.1	6.5e-178	cycling dof factor 4, partial
Swissprot	Q8W1E3.2	1.1e-41	Dof zinc finger protein DOF5.5
trEMBL	A0A291FGE8	4.7e-178	Cycling dof factor 4 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G62430.1	39.48	3e-43	172	CDF1	cycling DOF factor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G02510	AT5G62430.1	271	121	7	80	320	39	296	39.48	3e-43	172
AfisC3G02510	AT5G39660.2	327	116	11	88	322	131	457	36.39	4e-42	168
AfisC3G02510	AT5G39660.1	327	116	11	88	322	131	457	36.39	4e-42	168

Ortholog group

Species	Genes
Allium cepa	g401336.t1
Allium fistulosum	AfisC3G02510
Allium sativum	Asa2G02016.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	93	149	106.3	5.7e-31

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0010052	P	guard cell differentiation
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0010214	P	seed coat development
GO:0010227	P	floral organ abscission
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:1902066	P	regulation of cell wall pectin metabolic process
GO:1902455	P	negative regulation of stem cell population maintenance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network