result

Gene information

Detail information of AfisC3G02513

Location

Gene	Chr	Start	End	Strand
AfisC3G02513	chr3	438950464	438953225	+

Sequences

CDS

Protein

Gene

>AfisC3G02513
ATGGGAAAATTTTATTCTTCTTCCTCTTCTTCTCCAATTCTGTCCATTTCTTCTTTTCCAATTCAGTCCATTTCTTCTAAAAATGATCAGAAGCCAAAGCAATTTCGAAAGGCAAGTCCAAAGGCACAAGTTGCTTCTGGCAAAAGGAGTTCCACCTATAAAGGAGTGACCAGGTAATTAGAACAATTTATTATCTAATATATATATTTTTTAATGCTTGTGTTCTACGATTATATATCCACGTTATTTACATCAAATATCTCAAGGCAAACTGTTTTGACGTCACTGGATGAATGTAGGCACAAACTTACAGGAAGATTTGAAGCTCACCTCTGGGACAAGGACGGCAGTCGTCGCATTGACAAAAAAGGAAAGCAAGGTAAAATTAGAGTTCAACTGGGGACTAAGCAAATTTTTTTTTCTGAAATTTTTGGTCATTGTATAATGAAGTAAAAAGGATATTTATTAATTAAAATGTAATTTTTTACCATGCAATTCTCATTACGTTGGATCTACGATATGGCCTTTGCCTTGATTGGATGTCTATCACTACTCCAGTGTACCTGGGTAAGTTTAATTGCTGCTTCTTAATTTTGTACTTATTTTCATTCACATTATAGTCAATACAATAGTGTGCAAGTTGTCATGAGATAAGAAAACAACCTTGTTACATATGCACATTTCCTTATTCCTAAATGGTTAACATTTAAAGTTCAATGTATTATGGTATGCACATGTAAATTACTGTATTGTATGCTATACTTGTATATAAATCGTTGTTTATTAAAAGAAAAAACACCATATCAAATGTTGCAAGCTCCTCTCTTGAGAGCTCCAATTTAACCTGTATGTTGATCATCATTATAGTAAAAATCAACCAAATTAGATGTGAGCACGAGGGGGGGGGGGGGGGGGGGGgATAAATGTGCAAAAAGTTCACGAGTTTTGATGCATTCGCAATTTTTTTACCTCACCATACAGTTTTAAAGATGTTTAGTTTAAAATGTGCAAAAAGTTCACGAGTTAGAATCAAAATTTTATTACCTCATATTTTTAATTGGAAAAGTAGTATGTAAATTAGTTTGCAATTTCAAATCCATACCCTAACAGAAACACATATGCTATAAATGAGTTGAGTAGTCAGAATTCTAGTCATAACCAAAAATTATGGAAAAAAATATATTAATACAAATGTCTGTTTTGTTTCATAATTTTAGGTCCGTGCTTTGCTTTTTCAATATGTACTTCAAAGGCATCAAAGAAAAGGAACAGCGACAATAGATCAATTTGAAAAATTATTTTTACATATATGACATAAAAGATTATTATTTTTTTAAATAATTTTCCGCCTTTTGAAAATACCAAACACTGCATGCTTCCTCTCTCTTCTTTCCTTTGTTGTAGTTGTTAGGATTTTCATCCCCTCCTCTTCCATTCTTTTGAAGTGTACATATTGAAAACAACAACATAAAACTCAAATTTTGAAACCAAGCAGACTCTAACTTTTTCTTTCTATTTTTCCGATTTGCTCATGCTTGTTATATTTTCAACATTAGTGCATGTTTTTGTCAATATTCATTCTTCATTTTCTATTTTCTATACAATATATGCAGCGTTCTACTTATTACGCTACTTTTATTTTCATGTTCAACTTCCTATATATGTGCTTTTACCATTAGATAACATCCTTGAACGAATTTATTTTCTATGCTCAAGACAACTGATGATATATATGTATGCTGGATGTGTCACATGTATAGGTGGTTATATAGAGGAGAAAACTGCTGCAAGAGTGTATGATCTTGCTGCTCTCAAGTACTTGGGTGCCCAAGCCACTCTTAATTTTCCTGTAAGATAACACATGCATGGTTTCGTTAATTTTTCCACATTAATCATATGCATTCACAATCAAGTTACAATCAATTAGAATTATTTCTCTTGTAAACCGTACATAACTAGCAAATTTTTTTTTTTTTTTGAAACAAAATAACTAGCAAAATTATATGCATTGAAGCAGATTACGAATTATGCTAGCGAGTGCATTCAGATGCAATCTATGTCCAAGGAAGAGTACGTAGCAATGCTAAAGCGTCAGAGCAGCGGCTTCTCAAGAGGATGCTCCAAATATCGTGGTGTGGCTAAGTAATAATTCTAACTAATAAACCTAATGCAGTTTCAATCAGGCATTAAATTAGAAAAAGCTTATTTTTCAAAGTAAACGTCAATTGTTACGCAGGCACCGCCATGGTCGTTGGGAGGCAAGAATTGGGCATGTTATGGGTCGCAACTACCTTTACTTGGGTACTTACAGTAAGTAGTCTCATGGTATTTTCGAAAATTAGTTATGTCTTGCAGTATTAAGGTAGTTATATGGATGTATATATTATTTAATGTGATCAGAAAGAGAGGAAGATGCAGCCAAAGCATATGACTTGGCAGCAATACATTTTAGAGGATCGAATGCTGTTACCAATTTTGATAGGAGCTGTTACACGGATGCTATGATACAACAGCTATTTCTGCCACAACAGCAAAGTTCGACAGAGCAGGAGAATCCTGTGAGCGTTGCTTCAGAACCTGACATTCAGAGCTCTACCAGTGTGGAAACAATAGAAAATTCATTGCCTTTGATTCATATGGATCAAGGATTTAGTGATGTTGGGTACCATGATGATGAAGCTGCAGCAGCGGAAAAGGGGATAGATTTTTATGATTTCTTCAATGGCGATGGCTTTGCTGATAATGTTGAAAACTTTTTCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK77972.1	1.6e-61	uncharacterized protein A4U43_C02F12860
Swissprot	Q6X5Y6.1	2.4e-54	Protein WRINKLED 1
trEMBL	A0A5P1FIP5	1.1e-61	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G57390.1	54.55	6e-57	217	AIL5;CHO1;EMK;PLT5	AINTEGUMENTA-like 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G02513	AT5G57390.1	209	85	5	24	222	170	378	54.55	6e-57	217
AfisC3G02513	AT3G54320.3	242	106	5	20	249	27	267	50.83	3e-55	212
AfisC3G02513	AT3G54320.1	242	106	5	20	249	27	267	50.83	3e-55	212

Ortholog group

Species	Genes
Allium cepa	g474290.t1; g492952.t1
Allium fistulosum	AfisC3G02513
Allium sativum	Asa2G02015.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	52	106	26.5	5.2e-06
PF00847.17	AP2	Domain	149	199	30.5	3e-07

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000723	P	telomere maintenance
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006110	P	regulation of glycolytic process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0009755	P	hormone-mediated signaling pathway
GO:0010022	P	meristem determinacy
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010092	P	specification of organ identity
GO:0010187	P	negative regulation of seed germination
GO:0010449	P	root meristem growth
GO:0019432	P	triglyceride biosynthetic process
GO:0040008	P	regulation of growth
GO:0045723	P	positive regulation of fatty acid biosynthetic process
GO:0048506	P	regulation of timing of meristematic phase transition
GO:1901959	P	positive regulation of cutin biosynthetic process
GO:1904278	P	positive regulation of wax biosynthetic process
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09285	OVM, ANT; AP2-like factor, ANT lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network