result

Gene information

Detail information of AfisC3G02540

Location

Gene	Chr	Start	End	Strand
AfisC3G02540	chr3	443938339	443940469	+

Sequences

CDS

Protein

Gene

>AfisC3G02540
GGGAAAACTGCAGCTTGTGGTGAATACCATCTTTCTTCCTTTTTTATCTTATCAACTTTCTTCTTTCTTTGAATGTTATAAAAACTGTATTTGAAGCGAGTGAATCAAAGAAATTTTAATCAGACATGTTTAGGAGTTTGCCTGAAAACTGTGGTCTGCCAAGCTACTTCATGGCCACAGCCATGCAAAGAGGGGAAGGTTTAGAAGAAATTCCTTTAGACCGAGCTTTGTTGGCATCAAAAAATCATAGAGAAGCTGAGAAGAGGAGAAGAGAAAGGATTAAATCCCATCTTGATAGGCTTAGAATGATTCTAGCTTGTGATCCTAAGGTATGTTGTAGTTATTATAGATAGGGTTACTAATGATTAGAAATTCAATCAAGGAATGTTAAAAGATATTTATTTTTACTTTCCATTAAAGGATTTCTGTTTTAGGTTTTCCGGTTTTATAATTATTTTAGAATTGTTATATCTCATTTATTTACATCCTTTGCTATAATTATATTATAACCCTTATCATATTATGTTTTGGAAACACTTATCTTGTATGTATGGAAGGGATCACCTCACAGCATCTAATTTTAATAGATCTACACAATCTGAACTGAAACGAAAATTTGTTGATATGTTCTTAAATAGCACAAACCATACTTGCAAAATGTTTATTTGTTTGGAAAATCCTAGGATATTCAAAATAAAATTTCGAATCTCTTGTTTTATAGATGGTTTTGCAGTTCATATTAATCTAACATTCAGAACAAATTAAAGATTTTAAAATGGTCTATGTTTCATTGGTGGTATTCTTAATTACCAAAGATTTGAAAATCTCAAAATTTGTTTTTATTTAGAATTTAATTTGTCGCTCTAAAGGAGTACAGGGTGTGTTGATAAAGTGTAGGTTATGAATAATAGATGTAATTGGACGATCAAACAGAAACAAAAAAGATAATCAAAACTTCTGTTTAATATTTTTTGAAATATGCACATAACATGGAACCAGTAATTTTATGCACTGTTACATGAAGGAGCTATAACATTTCGCTAATCATGGTTTCTTACCAAAAAAATCAAACAAATAGTTTTTCCGATCACATTTTCGGTTCTATTATTTTCTTTTCTTTTTTATTAAATTACAAAATTTAAGAAATTCTCCAGAAAAGAGAATCATGTGAAAGATTAGAGGTAGAAGGTGAAATTTGCTCAAAGTTCATGACTTTGTTAAACACCATAAAGAGAACTTAACTTTAGTTTACATCTCACTTCTAACTCTTAAAGTGAATACATCAAAACATTCATGTATCCAAAATCATGAAAAAATTGGGAGACTTAAAGCTGTTGAACTTTATAGCTTCAACTTTTATTATTAACAGCTCTAGCTAGGGTTTGTTATCATTAATACCTACTTTAATCACTGCAGACAGACAAAGCGTCACTACTGGCTAAAACAGTAGAACATGTACGCGACTTAAAGCAAAGAATGTCAGAAATGACCAACTCTAGCATCGGCACTCGTATCTTTCCTTCTGATAATGATGAAATTTTCGTTATGCCTAAAACGGATGGTCAAAGCTCGATCTTTGAAGCATCAATATGCTGTGATGATCGTAGCAATCTTTTCTCCGAGACAACAGAAACTCTACGTTCCATTCACATGAAGACTTTAAGGGCTGAGATTGTGACCCTTGGAGGTAGAGTAAGGAATGTGATGGTTCTTGCAAGAGAGAAAAATGAAGAATATATCGATGATGCTAACGTTGATGATGATGATGATATTAGTTTCTTAAAAGAGGCTCTTCTTACTCTTGTTAATGATTCAAGTTCTTCGGATCGAATAAAAAGAAGGCGTGTTATGGATGCATGAAATATGATGTGCAATCTGAATTTTATTTCAGAAGTCCATCCTTCAGTGGTTAAAGCCACCAATAACGTTAGTATATTATATATGTGTGTATTGTTATAGTCATCTTGCTTGGACTTAATATATATTATGGTGTGTTTACAGGTTTTCTACTTAATTATGTTTGAAAGATTTGTGTGTCTTATCAGGGTTAGGGTTTGATTGAGCAATGCATGGTAATACTTGTTACGTACAGTCTCATATACAAGTAGATATTATTTATGCCGGATTCCGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020243536.1	3.8e-57	transcription factor bHLH106-like
Swissprot	O80674.1	2.6e-34	bHLH transcription factor bHLH106
trEMBL	A0A7M3UQJ7	1.8e-64	BHLH transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G56770.1	41.71	9e-36	146		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G02540	AT3G56770.1	199	87	4	32	214	40	225	41.71	9e-36	146
AfisC3G02540	AT2G41130.1	181	82	3	27	204	57	227	47.51	3e-34	141
AfisC3G02540	AT1G68810.1	195	100	4	27	212	164	350	40.00	9e-26	113

Ortholog group

Species	Genes
Allium cepa	g516317.t1
Allium fistulosum	AfisC3G02540
Allium sativum
Arabidopsis thaliana	AT2G41130.1; AT3G56770.1
Oryza sativa	LOC_Os03g59670.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	39	85	40.0	2.5e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009718	P	anthocyanin-containing compound biosynthetic process
GO:0009941	C	chloroplast envelope
GO:0010200	P	response to chitin
GO:0016036	P	cellular response to phosphate starvation
GO:0042538	P	hyperosmotic salinity response
GO:0080147	P	root hair cell development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network