result

Gene information

Detail information of AfisC3G02603

Location

Gene	Chr	Start	End	Strand
AfisC3G02603	chr3	455641119	455643619	+

Sequences

CDS

>AfisC3G02603
ATGAGCGACTTCACCTCAGATCAGTTAAATCTGAACACATTCTACCTAAATCAAGAAGCATACCCAGAAAATCTCTCGTCATCCTCAAGCGAAAACCCTATCCAGTCTTCGTCTACAAGCTACGAAGTGGAATCGTCAAACGATTCAGATAAGTTTTCAGAATCACCTCTAAATTACATAAACCATGTACTAATGAATGAAAACGATAAACTCGAAAACTACCCGGAGCACACCCGTCTTGAAGCCACCGAAAAACCTTTCTACGACCTTCTTGGTATTTCATACCCTCCGTTACAAAGTTACAGAAACCCAAATAACTGGTACGACTATTCACAGTACCAAGTACCATTCGAGTTCACCGGCAACTCAGTCTTTGGCATCACAAACAGATTCGGTATCGATCCCGCTAAGCAGTTCAATAAAGGTGTCGAAGAAGGTCTCAAGTTCCTTCCAAATATAAGCATCGATCCTTACGGATTTTCAATGACTGAGATAATGGCAATCAACTCTGAAAAACAGGAAAGAGTTAGAAAAAACCCAGATCACGATGATCCAATCAACGATCAGAGGATGGTCAAACAGTCAGTCACTTCCTCAGAACCCGTAGACAGCAACTTGTTCGATGAAGTCTTGCTTTGCGAGGACGACAAGTTCCCGAAATCGGTGAACGACATCCGAAAAACCTTGCAAAACGTCACAATCGGAAACAAAAAAGGAAGAAAGAAGAAGAACTCCGAAAAAGACAACAAGGTCGACGTCGACCTCAACACCATACTAACTGAATGCGCTCAAATGGTAGCTTCTAACAACCACGAACAAACGGATCATCTACTGAAAAAAATAAGGTGCCATTCATCGCCCACTGGGGATGGGTCCCAGAGAATGGCCCATTACTTCGCAAACGGCCTGGAAGCACGGATAGCTGGTGCAGGGGTCGACCTGTACAGGAATATGGCACGGAGGGAAACTGCATCTGATTTCATGAAAGCCTATCAGCTTTACGTGGCCGCTTGCCCATTCAAGAAAGTCTCGTACTATTTTTCCAACCAGACCATTTTAGATGTAACTGGAAAGGCAAGAAGTGTGCATGTGATCGACTTCGGGATCAACTATGGGTTCCAGTGGCCGTCATTGATAAAACGGTTGTCAGTCAGACCCGGTGGGCCGCCCAGGCTTCGGGTTACGGGGATCGATTTTCCAGAATCCGGGTTTCGCCCAAGGGAAAGGATAGAGGAGACTGGAAGACGCCTTCGTGAGTATGCTAAAAGCTTTAAGGTACCATTTGAGTATAACTGTATTGCGAGTAAATGGGAGAATGTAAGAGTTCAGGACTTGGGGGTCAGTGGAGAAGATGAAGAGGTTTTGGTAGTGAACTGTTTGTACCAGATGAGGTATTTAATGGATGAAACGGTGGAGATGGACAGTCCTAGAGATAGGGTGCTTAAAATGATAAGGGGATTGAAGCCGGATGTTTTTGTGCTTGGGATTGTGAATGGGGCTTATAATGCGCCCTTCTTTTTGACAAGGTTTAGGGAGGCATTGTTTTATTTTTCAGCATTGTATGATATGAAGGACACAATAGTGCCGAGAGGGCATGAGGTGAGGTACTCGGTGGAGAGGGAGATATTGGGGAGGGAGGTGATGAATGTGGTGGCTTGTGAAGGGGTGGAGAGGGTGGAGAGGCCTGAGAATTATAAGCAGTGGCAGGCGAGGAATGCGAGAGCTGGGTTCGTGCAGCATGAGGTGAATGAGGAGATCATGAAGAAGGCGAAGGAGAAGGTGGATATGTTTTATCATAAGGAGTTTGATTTGGAGGAGAGGAGTAGGTGGCTTCTTCAAGGGTGGAAGGGGAGGTCGATATATGCGCTGTCGTCATGGAAACCCAAGTAG

Protein

Gene

>AfisC3G02603
GTTTGATAAAAAATTGAAAATCAGAAAGAAAAAGGAAAGTTCATACTCTCACTGGATGATCTTGAAGGTAAAGTTCTCAATTCTCCCCTATTTTGTTTCTCACTTATTCGAGTTCTGTTTTAGAAATCGATCAATGATTCGTCAGAACATTGAACTTTTACCGTCAACTGCTGCTATCTTCTCCAAAGTCCATTATGAGCGACTTCACCTCAGATCAGTTAAATCTGAACACATTCTACCTAAATCAAGAAGCATACCCAGAAAATCTCTCGTCATCCTCAAGCGAAAACCCTATCCAGTCTTCGTCTACAAGCTACGAAGTGGAATCGTCAAACGATTCAGATAAGTTTTCAGAATCACCTCTAAATTACATAAACCATGTACTAATGAATGAAAACGATAAACTCGAAAACTACCCGGAGCACACCCGTCTTGAAGCCACCGAAAAACCTTTCTACGACCTTCTTGGTATTTCATACCCTCCGTTACAAAGTTACAGAAACCCAAATAACTGGTACGACTATTCACAGTACCAAGTACCATTCGAGTTCACCGGCAACTCAGTCTTTGGCATCACAAACAGATTCGGTATCGATCCCGCTAAGCAGTTCAATAAAGGTGTCGAAGAAGGTCTCAAGTTCCTTCCAAATATAAGCATCGATCCTTACGGATTTTCAATGACTGAGATAATGGCAATCAACTCTGAAAAACAGGAAAGAGTTAGAAAAAACCCAGATCACGATGATCCAATCAACGATCAGAGGATGGTCAAACAGTCAGTCACTTCCTCAGAACCCGTAGACAGCAACTTGTTCGATGAAGTCTTGCTTTGCGAGGACGACAAGTTCCCGAAATCGGTGAACGACATCCGAAAAACCTTGCAAAACGTCACAATCGGAAACAAAAAAGGAAGAAAGAAGAAGAACTCCGAAAAAGACAACAAGGTCGACGTCGACCTCAACACCATACTAACTGAATGCGCTCAAATGGTAGCTTCTAACAACCACGAACAAACGGATCATCTACTGAAAAAAATAAGGTGCCATTCATCGCCCACTGGGGATGGGTCCCAGAGAATGGCCCATTACTTCGCAAACGGCCTGGAAGCACGGATAGCTGGTGCAGGGGTCGACCTGTACAGGAATATGGCACGGAGGGAAACTGCATCTGATTTCATGAAAGCCTATCAGCTTTACGTGGCCGCTTGCCCATTCAAGAAAGTCTCGTACTATTTTTCCAACCAGACCATTTTAGATGTAACTGGAAAGGCAAGAAGTGTGCATGTGATCGACTTCGGGATCAACTATGGGTTCCAGTGGCCGTCATTGATAAAACGGTTGTCAGTCAGACCCGGTGGGCCGCCCAGGCTTCGGGTTACGGGGATCGATTTTCCAGAATCCGGGTTTCGCCCAAGGGAAAGGATAGAGGAGACTGGAAGACGCCTTCGTGAGTATGCTAAAAGCTTTAAGGTACCATTTGAGTATAACTGTATTGCGAGTAAATGGGAGAATGTAAGAGTTCAGGACTTGGGGGTCAGTGGAGAAGATGAAGAGGTTTTGGTAGTGAACTGTTTGTACCAGATGAGGTATTTAATGGATGAAACGGTGGAGATGGACAGTCCTAGAGATAGGGTGCTTAAAATGATAAGGGGATTGAAGCCGGATGTTTTTGTGCTTGGGATTGTGAATGGGGCTTATAATGCGCCCTTCTTTTTGACAAGGTTTAGGGAGGCATTGTTTTATTTTTCAGCATTGTATGATATGAAGGACACAATAGTGCCGAGAGGGCATGAGGTGAGGTACTCGGTGGAGAGGGAGATATTGGGGAGGGAGGTGATGAATGTGGTGGCTTGTGAAGGGGTGGAGAGGGTGGAGAGGCCTGAGAATTATAAGCAGTGGCAGGCGAGGAATGCGAGAGCTGGGTTCGTGCAGCATGAGGTGAATGAGGAGATCATGAAGAAGGCGAAGGAGAAGGTGGATATGTTTTATCATAAGGAGTTTGATTTGGAGGAGAGGAGTAGGTGGCTTCTTCAAGGGTGGAAGGGGAGGTCGATATATGCGCTGTCGTCATGGAAACCCAAGTAGTGAATGGTTAATGAAAGCTTTCTTAGTTTCTTTGTCAGTTTTACACTATGCATAGTAACCTGTTTTTTCATAGTTTCAGTGTATATCAGCTACACTCATACCATCTTTCAGATTTAGATCTTCAGATTAAGCTGTGAATTTACATTTCGGAACAAGGTATTGATGAGTAACCTGTACAACTGTGTAAAACAAACAGTAAGAAGTGTAAGTATGTCGATTACAATCATCCAGTCCAATAACTAAATCGCCAGAAAGAGGAATCATAAGATTAGAGAGTTGCAAGGTACAAAATGTGGATATGGATGGAGTATGGGTATATGTGTACTGTGTAAAAGGGAATGCGTGTACATGTGCAAGTGGGTGTGTGCAGCAGCATATGAGTGTGCGTGCATGTTTACATGTGCACGTGATTGCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252505.1	2.0e-183	scarecrow-like protein 9
Swissprot	O80933.1	4.9e-126	GRAS family protein 13
trEMBL	A0A5P1FEW5	1.5e-183	GRAS domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G29060.1	41.20	4e-134	475		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G02603	AT2G29060.1	665	289	18	45	628	50	693	41.20	4e-134	475
AfisC3G02603	AT2G37650.1	683	311	16	24	629	50	715	40.70	8e-134	474
AfisC3G02603	AT1G07530.1	546	254	11	127	628	224	766	44.87	2e-132	469

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	257	627	388.1	3.5e-116

Gene Ontology

Accession	Ontology	Name
GO:0000162	P	tryptophan biosynthetic process
GO:0005515	F	protein binding
GO:0000290	P	deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932	C	cytoplasmic mRNA processing body
GO:0003729	F	mRNA binding
GO:0005829	C	cytosol
GO:0004871	F	signal transducer activity
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009570	C	chloroplast stroma
GO:0009640	P	photomorphogenesis
GO:0009651	P	response to salt stress
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009941	C	chloroplast envelope
GO:0010200	P	response to chitin
GO:0045087	P	innate immune response
GO:0048519	P	negative regulation of biological process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network