Gene information

Detail information of AfisC3G02640

Location

Gene	Chr	Start	End	Strand
AfisC3G02640	chr3	465100366	465100827	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	CAA64221.1	3.8e-22	homeobox-leucine zipper protein
Swissprot	Q05466.1	5.3e-21	Homeodomain-leucine zipper protein HAT4
trEMBL	Q40782	2.7e-22	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G47370.1	60.68	3e-30	126	HAT2	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G02640	AT5G47370.1	117	36	3	11	119	66	180	60.68	3e-30	126
AfisC3G02640	AT4G17460.1	116	33	4	12	119	72	185	62.93	7e-30	125
AfisC3G02640	AT3G60390.1	132	48	4	1	119	81	212	53.79	5e-26	112

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04618.9	HD-ZIP_N	Domain	1	34	33.2	5.2e-08
PF00046.26	Homeobox	Domain	68	119	54.9	4.9e-15

Gene Ontology

Accession	Ontology	Name
GO:0000123	C	histone acetyltransferase complex
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0008283	P	cell proliferation
GO:0009506	C	plasmodesma
GO:0009641	P	shade avoidance
GO:0009733	P	response to auxin
GO:0009735	P	response to cytokinin
GO:0009826	P	unidimensional cell growth
GO:0010015	P	root morphogenesis
GO:0010016	P	shoot system morphogenesis
GO:0010017	P	red or far-red light signaling pathway
GO:0010218	P	response to far red light
GO:0010321	P	regulation of vegetative phase change
GO:0010484	F	H3 histone acetyltransferase activity
GO:0010582	P	floral meristem determinacy
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016573	P	histone acetylation
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0043621	F	protein self-association
GO:0048467	P	gynoecium development
GO:0080127	P	fruit septum development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network