result

Gene information

Detail information of AfisC3G02729

Location

Gene	Chr	Start	End	Strand
AfisC3G02729	chr3	484353852	484355340	+

Sequences

CDS

Protein

Gene

>AfisC3G02729
CATATTCACGGTGACAAAAACACCTCTTCCATATTAATTAGTAAATAATACCTCTATTTTATTCTTACAAATTGTTGATAAACTTAAGATTTATAATTGATGGAAAGTCATTTTGGGTGGAGGTCTTGTGTTAGTGATGATGGATGGCGGAAAGGGCCATGGACTCCTCAAGAAGATAAGCTTCTTATTGAACATGTTAATCTTCAAGGCGAGGGAAGGTGGAATTCCGTATCTCGCCTTACAGGTACAATCTTTTACTTGCAAACATATATGTCTTAAATATCATCTTTTATCTTCATTAGTATATGCATGTTAATGATTTATTTTTCTTTTTTTTGGTAATTTTAGGATTGAAGAGGAGTGGAAAGAGCTGTAGGCTAAGATGGGTGAACTACTTGAGGCCTGATCTCAAAAGAGGAAAGATAACACCAAATGAAGAGACTATCATTTTAGATTTGCATGCTAGATGGGGAAATAGGTGAGTAAATTAATTGCAATGTGTTAACCCATTTACAATTAACCTAGATTAATGTATTCATTGCTTGCACCACAAAGTAAAAAGATTGGAGAGAAAATAGTTTGTGAATTTGGTCATGAAATATTAAACCAACTCAGTTGATTGGTCTGTTGCCTTCAGTAACTCTCTACGCAAGGACATAACTTCAAAATGTTAAAATTATACATTTTTTAGTGACGAGTTTGATTACCAATAGTAAAGTTAGCCTTGAATGGATGGCTGAGTGCCTTTTGAATCAAATTTAAACAATAAAGGTACAAAGTTCAAACCACAAACACAGCACATACACATTATTTGATGTACTATATGCATATTAAGGTCGTACATCCAATATCAGGGTCTTTCATTTTGTTGTTAGTAGTAAAATTGTTGCTTAAACAAATGAACAGATGGTCGACAATAGCAAAAAGCCTTCCAGGAAGGACTGACAATGAAATCAAAAATTACTGGCGAACACACTTCAAGAAAGGAAAATCCTCAAAGAACATTGAAAGGGCAAGGGCCCACTTCCTTAGACAACAACAAGAGCAGAAGAAACTGCAATTTCAGCAGAGTAATGAACCGAAGCAGCAACAAGTTCAAGAGGCTGCAACTGCTAAATGTATGAATATGCCTCAGGAAATTCATGCAGCTGAAATGTATCAAGACATACAAGATCTGGCATATATGTTCCCTATGTCCTACATGCTTCTTCAAGAAAATGAAACTGCTGGTAGCTCAACAAGCGAAGAAGGTTCATTTGAGGATCAAATTCCAGATGCATGGGAGAATATATGGAACTTAGATGATCGAGTTCTTTACTACTAATTAAGTGATGTTAAACAGTTTTCCCTTTTCTTTTTTCTTCCTTAAATGTACCACAAAAGTGTGATTATTGGATGATAGTATTATGTATATGTCCACCTTGTAACAAGAAATATGATCTAATTATGTTTTCCAGAGGATAAGGATGCTAGAAACTTTAAGCCACCT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263812.1	7.4e-67	transcription factor MYB24-like
Swissprot	Q9LX82.1	1.8e-41	Myb-related protein 48
trEMBL	A0A6I9R3D6	5.3e-67	myb-related protein 340

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G13480.1	49.55	3e-52	201	AtMYB79;MYB79	myb domain protein 79

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G02729	AT4G13480.1	224	97	5	16	224	6	228	49.55	3e-52	201
AfisC3G02729	AT3G24310.1	228	101	4	13	224	15	242	48.68	7e-52	200
AfisC3G02729	AT3G30210.1	216	90	7	15	225	26	227	49.54	3e-47	184

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	18	65	59.6	2.1e-16
PF00249.28	Myb_DNA-binding	Domain	71	115	53.4	1.9e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0006952	P	defense response
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009585	P	red, far-red light phototransduction
GO:0009620	P	response to fungus
GO:0009651	P	response to salt stress
GO:0009686	P	gibberellin biosynthetic process
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0030154	P	cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0080086	P	stamen filament development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network