result

Gene information

Detail information of AfisC3G02802

Location

Gene	Chr	Start	End	Strand
AfisC3G02802	chr3	492103471	492109614	+

Sequences

CDS

Protein

Gene

>AfisC3G02802
ATGAAAAAAATTAGGCCGACTCTGACTTCACTACTCAGATTCTTCTTGAACCCTAATCTGCAGTCGCGATCTTTTCAATCGCCAAACGCAAAATTCAAAACCCATCAACTTCCTCACAGCTGTAGATTAAAAGTTTCCTTTTCAATCCTCAACCCCAATCAATTTTACACAACTTCTGCACAGACTCACAATGTGTTATCGGACATTATTGATGTGATCAAAAGAAACGATTTAGATTTAGAATCCAAGCTAACCCAACAAAACACGAAAATTTCCTATTCGGTGATTTGTCAGATTATGATTTCACTAAACGAGCAAAATGTTGCAGCTTTGCGCTTCTTCAAATGGGTTTTCAGCTCATGTGGTCGTAATGTTACTCCTGAAATTTGCAATCTTTTTGTGGATAATCTTGGAAGATTGGATGATTTTGACACTATGTTAGTTATGTTGAATGATTTCTCTGCAAAAAATCTTTCTCTAACCGAGAAGGCATTTGCATTTATACAATATCGGAATTCTAGCAAGCTTAAAATCACGGTTGCAAAAGCAATTGAAATTTTGGTTAAAGTAGGCGGGTCTTGTAAAGGCACTGGTATTTATTCGTTGGTTAAAGTACTATGTGGGATGAATTGTTTTGATATGGCAATGTTTGTAATGGAGGAGACCGTAAAGAAGAATTCTTACTACAACGTGCTTATTGGTGCCAAGTGTAAAAAGGGTAGCTTCTCAAATGCACACAACATGCTTGATGAAATGAAAAAGTTTGGGTGTGAACCGGATTTGAATTCCTATAATTACTTGCTTGGAAGCTTGGTTAAACATAAAAGGCTAGTTGAAGCTTGTCAACTAATGGAAAATATGGAGGCGATGGGTTTTTTTCCAAGTGCTATTACGTTCGAAGTGGTTGCTTTCCATGCTTGCTCAAATAAAAAGATGGATTCTGCTATGGAGTTTCTTAACAGAATGTTATCAGAGGGGATTAGACCAAGGTTTACAACCCATGCCGCATTTATAAAAGGTTATTTTTATTGTGGGAGAGTGGATGATGCACATAAGTATGTATTAGATATGTGTTTGAGAGACAAGAGTTCATCAACCATGAACTATAGTTTACTTGCAAAACTTCATTGGCAAACAAAAAATACTGTCAAAGCTGGTGGAATACTATACGAGATGATGGAGAAAGGCATTAAACCTAATTTTAGTGTTTATATAAAGATAGTGAAGGATTTACATAAAATATCGAGGGCTGATCTATCTTCACAGTTGAAACATGCATATTACAAATTTTCTCTGAGTACAGAAGAAGCTCGGTAAATTTTCTGATTCAAAGGTATGGAGTCTGAATGAAACTGGTGTATGCATTAAACAAAACTAGAGGTTCAGCAAACCTTTGATGTGCAATGTTACACTTTCTGTATTATTGAGAAGTGTGGCAAAATGGAGATGAACGATGAGTCGGGATATGAATTTAAAAATGCTGAAGTGTTCAGAGAATTAATGAACTCATGTGAAGATGACCAAAACAAGGTGATTATTACTACAATTAAAACTAGACAATTTCATCAGTATGAAAGGACCAATGCAACTATCTTCCTACAGTTCATGTGGTTAATCATCTCTAAAACTGGAATCAATGTAGTCAATATTCCTATTGTTGAAGAAACTGTATAGATTGGCAATATTTTTCATCCCTTTTTAAGCTCTGTTCGGAAAACGGATTTCAACTGAAAAGAGTTTGGACAAGTATACTGATCACTTGAACTCTTCCCATTAATTTTCCGTATCGTATTGCCTTCGTGGTGGTGAGGGGTATATTATGACCATAGATGCCTGTAAGTCCAGCTATGCATAATTTATTTTTTGGTCATGTCAGTATCAGGATCAACAATACTGTTGATTAACAAATGTTCATGTGTTTCAGACTTTGAGCTTGCATTCATAACACATACAGTATCGAAATATCTCATGATTTCTTTCAATATACATTATCCATGTCAATTACACTGGACTCATCTATGTCATACCAGATTTGTAATTAGTCAAATCAACCTGGAATGCATAGTGTGACCTATAATGTTTACATAAGATACACTCAATATAATGGCTGGTGTTGCTCCCTGTATGCCTTCATCCCAATACCCACACACATCTTCTCAAGGAATAGATTAAGTTTAAGAAGTGATCTCTACTGTTTGTGTCCTTTATTGTTTATTGCACATTTCTTATGCGTTTAATCGGATATTAAGCGACATTGATTTTTGGCATGAGATTAATCGATCTTATCACGTAAACTTGTCACTCTACAATAAATTAAAAATCACTCGTTAATCACCTTAGATGAAATACGTTAACATGAGATATGCCTGACCAATTTAACAGTGTTTTAAATCTCCTTCGTCTCGTCCAAGATCTCCCCAAGACTCTTTTGCGCTTGGGTGAGATGAGATTTCAGAGTTAACTTTTGATTTGTTTGACGTTGATCCCACGAAGATCTTAAGATCTCAATGTAAGATCTAAACCTAGATGGCTAGATATTAGTCCGAGATTTAAAACCTTGCCAATGTATGTTGTGGTTTTTGGGTTGACTTGAAGTAGCAAATCAGGAACTGTAGGATTAGATGTGGTGCTTCTTCACATTGCTGGATTGATCAGGTGAATAAATCTGGAACGGGGAGAAGGGGGTGGGGGTGGGCGCATTGGTGGACACTATATTACATACTCTGTTCCCATTGAGATAGAGTCCTCTATCCATAGCTGCCTTATCCTCGTGAGCCCAACAAAATCTCATCCATTGATTTGTGAATCGGCGGTCGATTGTATAGTGGATCTCGGTTGTTGAGCAGATTATTGTAACTAATGGATGAGTTATTGTTGAGCATATAGAGAAAGAAAAACCAGAAACATGAAATATGAACTCATTCCAGCCGCATATCTACCGGGTTTTACCTGATGAATTTTGGCATTTTTGGTTGTTTCAAAGAGCTATAATATTTGTATTTTAACTATTAAGGTTGATTGTATTATTACCTTTGTTTGGAGATCTAATGCTTTCAGAACCGTCTTCTAGATTAAAGATTGTGTTTACTCGAATTTCAAATTTGTTTTAGGCATTGTTTTCTTTTCCTGAAATGGAGTAGATTTTAGAATTCATACACGTAGGTTATGTATGTTCATATTTATATTCATATCTTCTCATCATGATGGTCAACTGGTGTCACAGTGGTCATCTTTTACCTTGGCCTCTTTGGTTCTAGCTATAAATAGCTATTAGTTTTCATGAAGATGTGGATGCTTAACCAAACCAAATTGCTATGCTGTATAATCAACTGAATCAAATTAGTATGTAGAAGAATAATTTAAGTTAACTTTATGCATCACGTAACAGAGAATGTAGGCGTAAAGGGCATCAACTGAATAAATTGAACAAATACATCTGATAGCTGTACGTTTTTTTTTGTTTTTTTTACAGTAAGCAAAATTTTAGTTAAAAACTGGAGAGTCACACGGATGATGCATGAAGTGTCATCCAAAACCACTGGTTTGCCTTTATTTACTGATTCCACTCTTCTCCTTTTTATTTGCAATTTCATAGTAATAATTTTAGTAGCACTTCCTTGTTTTTATGGATAATGTCCATGCGTTTAACAGCGTCACACTAATCTACTGGTTTATCTTAATTTTCTCCCTCTCTTTCTCCTCATATTTTTCTATTTGTTTTATTTCATTAAATTGTAGCTCAGTGGATAACTCAAAGGCTGTAATCACACCTTTAGTTATTACCACCACATATAGTTAAAAAAATTCGCTTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATAAGTGCAAAATAAATGTAGCACATAAAATTCTAATGACAATTAAACGTTCAACAAAATTTTCCATATGGTTCTACATTAAAGAAAACACTAATAATCTGTAAATTTTGTTTCGGATCCTTCAAAGATAATTAACGTTCTCTGATTAACTAATAACTGTTGGAATAGTAAGATATAAACAAAAATCTGATTCCTGATAAAAAATCTTATGATAATATATATAAGAGATAGCAACAGGAAGATATCACACAAAGGTATAAAAATAATAATCTATTTTTGAAACTATCAAGTACCTTTGTGCAAAACATCTGAACAGATAATTTTGCCATTATATATTTAGCGAGTAAATTGTACTTGAATGCTTAACAAAGTAATAAAATAGTATTAATTTTTTGTTCCTTATCTCCAAATTTAAATTATTTGACATGTGGCAATGTCCCTATGAATTTAAACCACAAGATCAACCGGTTTTCATGAATGCCCTGCTGATGTGGCGACATGTTCTGCACTGTTTTTAACTTCCTCTTTTCCTTCATCTTCTTTATATATCCTTTTTTTCTAATATTGGATTAGATTTTTAACTCTATTCTATTTATCTTTTACTCCATTTTATTTTCTTCTTTAGTCTGTCTAACGATATTGAACTTAATCAAAGCAGCATGTTGAGAAGCAACATTCAGGTACATCTCATCCATTTCTTACTCCCAGTAGTTTAAATTTTTTTTTTGTCACAATCAATTTGTGCCAGTAGTTTGAGAAAAATGCAAAACGATTTACTTATTTCCAATTACATGGATTCAATTTGTTTTGTATGCTAATGTCCAATATTCATTTGGTTGATATTTTATGCTGAGCAAATGAGTGATCAACATTCTAATATCTCGATGTAGAAACAAAGAAACCGTATGCAGAAAATTGACAATTCATATGTTACTAGGAATTCAACAAAAGGGAAGATGCAGACTCTGTTCCGCTTTCAATCAGTTTAACGTGCAATGATGCTCATAATTCATGGATTAACACAGATGAACATCCCCCAAAGGTGCCATTTCAATGCAATAAATACTAAAACTTGGCTTGTCAGTTTTTGATTTTACTCTTAAAAAAATTCATCAGGCAAGGAAACCATATACGATTACAAAGCAAAGGGAAAGGTGGACAGAAGAAGAGCACCGGAAGTTTCTAGAAGCTCTTCAACTCTATGGCCGTGCTTGGCGTCGCATAGAAGGTACATTTCTGCTAGTAAATGATCCTACATTTGTAGGTTTATGTGAATCATGAGTTAAAACTAAAAGTTCTCCTTCAGAATTTGTAGGCACAAAAACAGCAGTCCAGATCAGGAGTCATGCTCAGAAGTTCTTCTCGAAGGTTTGTTTCCTCAAAACAATATTTGTATGATGCATTCACAACTTCAATAAGCACCACAATAGTGTCTTTGGATCAATTACAAAACACTTAATGCATTTGTATCGAATCAGGTGGTTAAGGAATCGAAGCCTATAGAGATTCCTCCTCCACGACCTAAAAGGAAGCCGGCCCATCCTTATCCACGTAAGATGGAAAGTTTTAACGTAGGCAAATACGGACGGTCATGTTCACCAACCGAACAGGAAAATGGTTCACCTACATCTGTTTTGACAGCATTTACCCACCAGAATATGAACTTTTTCTCTGCATTTCCAAATCAGTGCACATCTCCAGCTACTTCTGGTACTGGATCAAACGAGCAAGAATCATCAACTGAAGAAACCGATCGGAAACACAATCAATCTCCAATGGTATCTCATGTTATATACATAATCATTGTATTTATTTATGTTATACGGTTCTAATTCATATCATCTATCATTCCAGGATGTGGATTTGTCAAAAGAAGCCTCGATCTCTTGCCTAAAGCTGTTCGGGAAAACGCTAGTAGTTGCCGAAACAGACAAATTAACGAACTCAAAGTCATCGACATTAATAGGTGCTGAGAAGCAAAAAGAAATAAGCACAAGCATTAGTTCATCACTGCCTCTTCTTCCAATGTATAGAGATGGTATGAATAATCATGTCACACCGCTGCCATGGTGGGCGTATTACGGTAGCATTCAATTTCCTTTCTTTCAACAACAAGATATGAGCGGTAAAATGAACACTACAAACAGTGCTCGAATCTTAAAAGACAACTCGGTTAAGGGGTTTGTGTCGTATGAAAAAAGTATAGTAAAAATAAAAGAGCAGGACTGTATGAAGATGATGGATGAAGGAGATGATGAAGAATTCACAGGATTGCGCTTATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020248307.1	1.1e-80	pentatricopeptide repeat-containing protein At1g09900-like
Swissprot	F4KGY6.1	3.6e-41	Protein REVEILLE 1
trEMBL	A0A5P1E6X4	1.7e-80	PPR_long domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G17300.1	42.39	4e-40	163	RVE1	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G02802	AT5G17300.1	309	141	12	448	735	3	295	42.39	4e-40	163
AfisC3G02802	AT5G37260.1	192	67	5	491	673	25	197	50.52	5e-35	146
AfisC3G02802	AT1G18330.2	200	91	3	482	673	59	252	47.50	2e-34	145

Ortholog group

Species	Genes
Allium cepa	g341452.t1; g341453.t1
Allium fistulosum	AfisC3G02802
Allium sativum	Asa2G02237.1
Arabidopsis thaliana	AT5G17300.1
Oryza sativa	LOC_Os03g02762.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13041.3	PPR_2	Repeat	229	273	40.9	1.6e-10
PF01535.17	PPR	Family	307	327	11.5	0.25
PF00249.28	Myb_DNA-binding	Domain	502	545	47.8	1.1e-12

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005199	F	structural constituent of cell wall
GO:0005634	C	nucleus
GO:0009409	P	response to cold
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009734	P	auxin-activated signaling pathway
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009827	P	plant-type cell wall modification
GO:0009845	P	seed germination
GO:0009909	P	regulation of flower development
GO:0010243	P	response to organonitrogen compound
GO:0010600	P	regulation of auxin biosynthetic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0019904	F	protein domain specific binding
GO:0042754	P	negative regulation of circadian rhythm
GO:0043496	P	regulation of protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048574	P	long-day photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network