result

Gene information

Detail information of AfisC3G03034

Location

Gene	Chr	Start	End	Strand
AfisC3G03034	chr3	534975637	534976800	-

Sequences

CDS

Protein

Gene

>AfisC3G03034
ATGGATCAAGTTACCACAAAGAAGAAGCCATGGATGCGAATGTTTCTCATAATCCTATCCGTAATAGCCAGCATCGTAGCATATCGTATAATAAATCCAAGTTGGACAAGAAAAGCAGTAAGAGAAGCCGAGGCAGTGGCTGACATGGACTGTTCAGGGCATGGCAGAGCTTATATTGATGGAATCAACGTCGATGGAGTCCCAATGTGCGAGTGCAACACTTGCTACAGCGGTGAAGATTGCTCTGTATTGCTTCCAGATTGTCCTGCTGATGTAGTCAGGTAATATATATATAACATGCAGTTATATGATTTACCATCATGGACCAATCATGTGGAAAATAATGATGTATGTTTGTCTGTATGTATGTCTGCAGTGGAGATGCCATGTTTCTAGAGAAATATTGGATGAAACACAGCGCAAATGCTGCTGTTCTGGAATCGGGATGGCATAGAATGAGCTATTTCTTTAGGCCCTCTTCTGGTGATATTATTAACGCAGAGCTTGAGAAGCATGTTAGACTTTTGCATGATGCTGTTGGCAATGCCAAGACTGCTGGTAAATATATCGTGTTTGGTACTGGAGTTACTCAACTTCTCAATGGTTTAATTATTTCACTTTCGCCAAACGTCAGTGGCGATTCACTGGCGCTGGCAGCAAAAGTTGTGGCTGATGTTCCTTATTATCCGGTAATGTTTCTTTTATATTTGGTTAAACTATATAAGGAAGTGTGAACGATAAAACAAATATTAACCAGTCCTTGTTTTTCCATTGCACTGTGTATAGGTGTTCAGAAGGCAGACAAAATTCTTCCAATTTAAAGGGTACGAATGGAAAGGAAATGCATCAGACTACGTCAACACGACTACTCCTGAAAACTTCATAGAACTAGTGACTTCGCCTAATAACCCGGATGGTCTACTTCGGCATTCCATAATCAAAGGATCTTTAGCCATTCATGATCATGTTTACTATTGGCCACATTATACTCCAATTAAAAAACCCTCCGATGAGGATATCATGTTGTTCTCCATGTCCAAGTACACAGGACATTCGGGAAGTCGATTTGGGTATGAATATTTTTTACATATTCAGCAACTTTATTCGTCCGTTGATATACTTTCAATAATTAACGTTAAGTGGTATTATGCAGGTGGGCATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	BAD06448.1	1.4e-111	alliinase-like
Swissprot	P31757.2	1.4e-105	Cysteine sulphoxide lyase
trEMBL	Q76BK3	1.0e-111	Alliinase-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34060.1	46.13	2e-76	282		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03034	AT1G34060.1	297	141	7	13	294	4	296	46.13	2e-76	282
AfisC3G03034	AT1G34040.1	269	127	6	32	294	31	294	48.70	1e-69	259
AfisC3G03034	AT1G23320.1	243	134	6	77	315	15	248	39.51	1e-41	166

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04863.10	EGF_alliinase	Domain	34	88	95.8	1.3e-27
PF04864.10	Alliinase_C	Domain	90	295	325.7	2.9e-97

Gene Ontology

Accession	Ontology	Name
GO:0042742	P	defense response to bacterium
GO:0005773	C	vacuole
GO:0005576	C	extracellular region
GO:0005789	C	endoplasmic reticulum membrane
GO:0009684	P	indoleacetic acid biosynthetic process
GO:0009723	P	response to ethylene
GO:0009958	P	positive gravitropism
GO:0010078	P	maintenance of root meristem identity
GO:0010087	P	phloem or xylem histogenesis
GO:0010588	P	cotyledon vascular tissue pattern formation
GO:0043562	P	cellular response to nitrogen levels
GO:0047654	F	alliin lyase activity
GO:0048467	P	gynoecium development
GO:0048527	P	lateral root development
GO:0070529	F	L-tryptophan aminotransferase activity
GO:0070546	F	L-phenylalanine aminotransferase activity
GO:0070547	F	L-tyrosine aminotransferase activity
GO:0080022	P	primary root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network