result

Gene information

Detail information of AfisC3G03090

Location

Gene	Chr	Start	End	Strand
AfisC3G03090	chr3	544398448	544399624	-

Sequences

CDS

Protein

Gene

>AfisC3G03090
AATTTTATTAGGGGTCAAGCAGAGAGGGAGTTTAAAGTAGAAGTGGAAGCAATTGGAAGAGTCAGACATAAACATCTAGTCAGGCTACTTGGATACTGTGCCGAGGGTGAATACAGGTTTATTGCTTAAACTTAAGTTCATAAATTCACATAGAATATAATTTCAAAAATGTATTGAATCTTTGTTTATATGTATGTTCTTGTTAGAATGCTTGTTTATGAATATGTCAACAATGGCAACCTTGATCAGTGGCTCCATGGAGAAGTAGGTAATGTCAGTCCACTCACATGGGAAATTCGAATGAACGTTATACTTGGAACTGCAAAAGGGTATATTTGAGTATTTATATTATAATTTTACTCATATTTCCATTCAATGCGTGGTTAATAAAACTTGTGATTTGCAGCTTAGCTTATCTTCATGAAGGCCTTGAACCAAAAGTTGTGCATCGAGATGTAAAAGCAAGCAATATACTTCTAAATCAGCAGTGGAATCCTAAAATTTCTGATTTTGGCCTTGCCAAACACTTGGATTCTGAGAAGACTTATGTCACCACTCGTGTTATGGGAACATTTGGGTCAGTTTAACAATTTTAGAACAAGCCTCTATCTGTATCTTTTAATACAAAGCTATATAGAATCAACTCCATTTTATTTTGAAAAAAAAAGAGCTTATAGCAAAGAAATGATGAACCATTTGAGTTCCACTTCGATACAAATTTATATTAGAACATTGATAAGTAGACATATTATCCTTTGTCTTCAAACTTAATACCCAGAAAAAGCTTTTCAAAAACAGGTTTCGTGAAACATCTCTGGAATTATTTTTAACGAAAATATACAGTCTACACTGCAAATATTTATTTTATAAAAGATTGCAGTGTAGACTGCATTTTCGTTGAAAATAATTACATTGGATTTTCGTGAAACGTTTTTAGGAAGGAGACTAAAGTGAATTTTGAAACTTATGAAGGGTGTTTGAGAAAACGTCATTTTTTATGATTTATCACTTTGTAAAATATGTATAACTTATTTGGTAATCACACAGTTATGTAGCACCTGAGTATGCTAGTACTGGAATGTTGAATGAGAGAAGTGATGTGTATAGCTTTGGTGTACTAATCATGGAAATAATCTCAGGAAGAACTCCTGTGGATTATAGAAGACCACGCGATGAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246311.1	1.3e-90	probable serine/threonine-protein kinase At1g01540
Swissprot	Q3EDL4.2	1.3e-84	Probable serine/threonine-protein kinase At1g01540
trEMBL	A0A5P1FQD5	9.2e-91	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G01540.1	80.79	2e-86	315		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03090	AT1G01540.1	177	34	4	180	188	364	80.79	2e-86	315
AfisC3G03090	AT1G01540.2	177	34	4	180	188	364	80.79	2e-86	314
AfisC3G03090	AT4G01330.2	177	36	4	180	196	372	79.66	2e-84	308

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	6	173	135.1	2.3e-39

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0016021	C	integral component of membrane
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0007166	P	cell surface receptor signaling pathway
GO:0019722	P	calcium-mediated signaling
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0009611	P	response to wounding
GO:0009620	P	response to fungus
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009845	P	seed germination
GO:0019901	F	protein kinase binding
GO:0046777	P	protein autophosphorylation
GO:0048364	P	root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network