result

Gene information

Detail information of AfisC3G03094

Location

Gene	Chr	Start	End	Strand
AfisC3G03094	chr3	545686756	545688201	+

Sequences

CDS

Protein

Gene

>AfisC3G03094
CTCATTTGATCACAATTTTTTCCCTTCTAAAAAACATATATATCAAAATTCTTAACCAATTTAGACATGGAGATACCTCAAACTTTAATAAGATCACACATTCAAGAAAACCAAGACCAAGATCAAGACAAAAACTCCACGTCTTCCAACACCTCTTCCTCGCACCTTGAGCACATGTTTGAAAAGGTGGTCACTCCGAGCGATGTGGGCAAGCTCAACCGCCTAGTCATACCAAAACAACATGCGGAGCGCTACTTCCCTCTAGAACCTTCCACTAACGAAAAAGGAGGTCTACTTTTGAACTTTGAGGAGAACCAAACAGGGAAGCCATGGAGGTTTAGGTACTCTTATTGGAACTCGAGCCAAAGCTACGTCATGACCAAGGGATGGAGTAGGTTTGTTAAAGACAAAAGGTTGAATTCTGGTGATGTGGTTTCTTTTTCACGAGGGAGTGAAGGGAGGTTGTTTATTGATTGGAGAAGAAGGGCGGTTCCAGTGTCGGAGATACCTATGATGAGGTCGATTGCTCCTAACTGGGGATGGGGTGGTTCGGTTTTCCCACCTCCGTTTTACCTTCATCCTATTTCACAGGTATTCATTTATTTATATGGTTGAGTTATGATGGTAAAATTTGTGGCTAAATGTTACCGTTTACAACATGACATACATAGCTTAGTTACAATACTTAACATATGTTCAAAATTTGCATCCTTTTATCCGTATGAATTTTTAAATTAGAGGCGAATCAGTTCCTGCAAAGTTTGCATCTTTAGGTCTTGATTTTGCCTGGCAAAAGTTTGTTCAGGACAAATGCATTTTATGATAGACTATGTACAAAATGTGCGTACTAATGGAATTGGGATATTTTGGACTGCAGTTTGATATATGAACAAATTAAATTTAAGTTTATGCTTCAAATATTTCTGATTTTTGTTCAATTCAATGTTACTTAAATGGAAGAAAAAAAAATGTTTGGAGTTTCGCTTTATTTTGTTCATTAAGTTTATATTATTGAGTTTCAGAATCCAACACGCAGTTCATTCACATATTAGGACATTAAGCGCACTGTATTAAATTTATATTCATATCAATTTTTATTTATGTTCGTTTTAATTTTTACTAAACTTTACTTAATCTTTTCAATTATTGTCCACCTAGGTTAGAACTTATGATGATCATCAAATTTTAGAGTCAGTTCCTGTGTTAGCGCATCAACAGATGATTGAACCTAGACGACAAGTTCGATTATTTGGGGTAAATCTTGAATGCTCAGAGCAAGAAGATCCACCATCACCTCTTGAATGGAGGCTTTCATCGTTCACCCCACCCACGAGGAATAACGAGCTTCAGTTGATGCCAATTAGTAGAATTGAAGATGAAAATAAATGAGAACCAAGAGAAGAGAATGATATATACATAGGTTTAATCCTTTTACTTTAATTTCCT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010941178.1	5.3e-50	B3 domain-containing protein Os03g0120900
Swissprot	O82799.1	1.4e-47	Protein NGATHA 1
trEMBL	A0A6I9SBY2	3.8e-50	B3 domain-containing protein Os03g0120900

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G46870.1	48.71	5e-49	191	NGA1	AP2/B3-like transcriptional factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03094	AT2G46870.1	232	55	9	35	214	32	251	48.71	5e-49	191
AfisC3G03094	AT3G61970.1	234	77	9	17	213	2	225	47.01	2e-46	182
AfisC3G03094	AT1G01030.1	111	24	3	35	140	53	161	72.07	2e-41	165

Ortholog group

Species	Genes
Allium cepa	g214923.t1
Allium fistulosum	AfisC3G03094
Allium sativum	Asa2G02440.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	38	140	96.4	6.6e-28

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009536	C	plastid
GO:0009741	P	response to brassinosteroid
GO:0009873	P	ethylene-activated signaling pathway
GO:0009910	P	negative regulation of flower development
GO:0010073	P	meristem maintenance
GO:0010358	P	leaf shaping
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0048527	P	lateral root development
GO:0048573	P	photoperiodism, flowering
GO:0080113	P	regulation of seed growth
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09287	RAV; RAV-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network