result

Gene information

Detail information of AfisC3G03170

Location

Gene	Chr	Start	End	Strand
AfisC3G03170	chr3	562752845	562754104	-

Sequences

CDS

Protein

Gene

>AfisC3G03170
CTTGCTCTCTATTCCTATACTCCATCATAACACCATCTCTATTTTATATCTTTCTCATTGCAACCTCGACTTAGATCTCTAATTTCAACTTCTACACATGAAAATACAGTGTGATGTTTGCAGCCAAGATGAAGCTTCAATTTTCTGTTGCGCTGATGAGGCTGCTTTATGCGATTTATGTGACCAGAAAGTTCATTATGCAAATAAAGTAGCAAGCAAACACCAAAGGCTCTCTCTTTCTTCTTCAATCCAAACTCAACCTCTTTGTGATATATGCAAGGTAATACTTTATCTGAATCGGTCTGTGAACTTCTGAGTAAGTGTCATAAACTGATTACAAAATATTTATATTATTTTAGGAGAAAGCAGGATATGTGTTTTGTCAAGAGGACAGGGCAATATTATGCGTGAACTGTGATGATTCAGTACATAGTGCTAACAAACTCACTATGAAACATAGTAGGTTTTTGTTAACCGGTGCTCGGATTTCAGATATCGGTAACAAAAATAAGAACATCAAAACGTGTGATCTGGAAAAAGTAGGTCAAGATAAATCTACGAGTTTTGAAGAAAAAACTTCGGCTGTTAGTAATGGAAGCACAAGCATTATATCGGAGTATCTGACAAAGACACTTCCAGGTTACTGTGTCGAAGATTTGCTAACTGATGATGTGAATGGATTCTACCAGGTACTTAAATTTAGGCTAACTTTGATCATTTTATGTTGTTGTTAATTACCAACCATGCTTTAATTTTGCGTTTGCAGAACGATGAAATGTTTGCGTTTTCTGAACCCGAGTTTGCAAATCCAACTGGAAATGATTTCCAGATTTGGGTGCCTCAAGTTCAATCGATGAATTTTCTACAGACTAACGTCAATGGTTCGATGAATATAAACTTTGGGATCGAGAAAGAGAAACCGAATCAACAGTTCAATGTAGGAAGGAAACAAATGAACGATGATTGTTTCATGGTGCCTCAGATCAACAGTCCAGTAACAAGCAACAACTACAAGAGATTCAGGCCTACCTCCGCTTGGGATTTCTGAGGGTTTTTTTTTTCTTCCCCTCCTTTTTTCTTCTTGTTTAAGATTAATCCGCTTTCTTTGTGGTTGTATTTTGCTGTGATAAACTTGCTGTTTATGTTATGATCATGTAGTAAAACCGTGTGGCAGTTGTTTGGTTGTTTCTGCTTGTAGTATGATATTTGAATGCTATGCATTATGAGAAAAAATAAACATTAGCAAAAACTTAATTTCAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020243325.1	2.3e-56	LOW QUALITY PROTEIN: B-box zinc finger protein 21-like
Swissprot	Q9LQZ7.1	2.6e-36	Protein SALT TOLERANCE HOMOLOG 2
trEMBL	A0A804HPP9	7.5e-49	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G75540.1	37.05	6e-45	177	AtBBX21;BBX21;LHUS;STH2	salt tolerance homolog2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03170	AT1G75540.1	332	130	10	1	257	1	328	37.05	6e-45	177
AfisC3G03170	AT4G39070.1	199	72	3	1	162	1	199	45.23	1e-35	146
AfisC3G03170	AT1G78600.1	122	55	1	1	118	1	122	51.64	3e-33	138

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC3G03170
Allium sativum	Asa2G02493.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	4	46	25.3	1.1e-05
PF00643.21	zf-B_box	Domain	54	95	29.7	4.7e-07

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003712	F	transcription cofactor activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008270	F	zinc ion binding
GO:0009651	P	response to salt stress
GO:0010200	P	response to chitin
GO:0043565	F	sequence-specific DNA binding
GO:0048573	P	photoperiodism, flowering
GO:0080167	P	response to karrikin
GO:0090351	P	seedling development
GO:1900458	P	negative regulation of brassinosteroid mediated signaling pathway
GO:1902448	P	positive regulation of shade avoidance
GO:2000306	P	positive regulation of photomorphogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network