result

Gene information

Detail information of AfisC3G03260

Location

Gene	Chr	Start	End	Strand
AfisC3G03260	chr3	580735943	580741080	-

Sequences

CDS

>AfisC3G03260
ATGGGCTGCGTCTCCTCCAAAACCGCAACCCCGGGCAGCCCAGTGTCCAAAGAATCTTCCGGAGTTATCGGGGTATCTTCTAGGGAGATGTTGGCTGGCCCGCTTTGGAACCGGGTGCATGTGGAGAAGAGTGAGTCCGGCGACTCAGGGCAGGTGAGCTCCTCAAATGGCGGTAGCTCTCAGAGTTTCGTGCTCAGCGTCAAAAATAGCGGGAGGTTCGTCGAAGGTGAATGTGGGGCTGCGGGTTGGCCCACTTGGCTTTGTCATGTGGCCGCCGAGGCTGTTTCTGGCATGGTTCCCCTTCGCCCTGAATCTTATCAGAAATTAGATAAGATTGGACAAGGCACATATAGTACTGTGTTCAAAGCACGTGACCTGGACACAGGAAGAATGGTAGCTCTGAAGAAAGTTCGGTTTGACAATTTTGAACCAGAGAGCATCAAGTTCATGGCACGAGAAATACTAATTCTTCGTAGGCTTAACCACCCAAATGTTATAAAACTGGAGGGAATTATAACTTCTAAATTTTCATGCACCATGTATCTTGTTTTTGAATACATGGAGCATGACCTTGCAGGATTATCATCTTCACCAGATATTAAATTTAGTGATTCACAGGTGAAGTGTTATATGCAACAGCTGTTATCCGGGCTTGAGCATTGTCATTCGCATGGTGTCATACATCGTGATATCAAGTCTGCAAATCTTCTAGTAAACAATGAAGGGGTCTTGAAAATTGCTGATTTTGGTTTAGCTAATTTCATTGACTCTAGTCGATGCCAACCATTGACCAGTCGGGTAGTGACTCTTTGGTATCGCCCACCTGAGCTTCTGCTGGGTTCGACTGAGTATGAAGCTTCAATAGATTTATGGAGTGTCGGTTGTGTTTTTGCTGAACTCTTTATTGGGAAGCCTATTTTACAGGGAAGAACCGAGGTGGAGCAAATACATAAAATCTTTAAGCTCTGTGGTTCGCCACCAGAAGAATATTGGAGAAAGGTTAAATTGGCCCATGCCACAGTTTTTAAACCTCAAAATCCATATGTAAGTTCTCTTCGCGGACAATTCAATTTTTTACCTGAATGTGCATTTGAACTCCTAGAATCATTCCTGTCTCTCGAACCATTTAAGCGTGGAACTGCAAAATCTGCTCTTGCCTCTGAGTATTTCAAATCAAAACCTTATCCTTGTGAACCATCAAGCTTACCTAAATATTCGCCTCATAAGGAGATTGATGTAAAAAGTCGCGAGGACTTACAAAGGCAAAGGATTGCTACTAGAGAGCCTGGATATGATAATCCAAGGAACCCGTTGAGAAAAAACACGACAGAGGAGTTCAAAGGCCCCTGTAGAATTCCTCCTCGGCCAAAGGAGCAATGGACCAATAACTATACTTTCAATGCTGGAAAACATGGTTCTTCTAAAGAAAATGGTGAAAGAAGAATATTCATAAATCAACAGACTAACGAGAAAGAACATTACCTTTATTCTGGACCCCTAACAGCCTCTAATGTTAGCGGGTTGATATGGGCAAATAACTCGAAAGATGGCAACCTTTCAAATCATTCTTCTACTAGGCCTAATTCAAGACAAAGTGGTTCTAGGATGGATACATCATCAATTCTAAGGCCTAAGAATATTTTAGAGATGAATACACAAGCAATTAGAAGTACCATTAGTCACGAGGATTACAAAGACCACAAACAATGTGAGATTCATAAACAGGCTATGCTTAAGCAATGGATAGAAAATGACCATCACGCTTCATTTGTTGATTCTGATACCAACCAAGATTACAAAGAAGGTGTTATATCATCCGAGGAATTCAGTTTGGTTTCGGACTACCAAGACCATTCTGATGCATTAAGCGTAAACGAGTACATGGAGAAACATGAAAGAAAGCTTCGAGAGGCTGCTCCGAAGCCTTTTATTCAGAGAGGGTAA

Protein

Gene

>AfisC3G03260
CTCCCCGCCAATCTCGCGTTCATCAACCAGCCTCCTCAAAATAAACATCCAAACAATATGCCATCGTCCATTTTTTCCCGCATCCCCCAATTTGATTTCCCCAAAAAAGAAACCACATCCATCTCCTTACCTCCTCCGATCCTCCGCATAAAGTCACCCGGACGCCACCCAGGCGTCTCCCCCATGCATCATGGGCTGCGTCTCCTCCAAAACCGCAACCCCGGGCAGCCCAGTGTCCAAAGAATCTTCCGGAGTTATCGGGGTATCTTCTAGGGAGATGTTGGCTGGCCCGCTTTGGAACCGGGTGCATGTGGAGAAGAGTGAGTCCGGCGACTCAGGGCAGGTGAGCTCCTCAAATGGCGGTAGCTCTCAGAGTTTCGTGCTCAGCGTCAAAAATAGCGGGAGGTTCGTCGAAGGTGAATGTGGGGCTGCGGGTTGGCCCACTTGGCTTTGTCATGTGGCCGCCGAGGCTGTTTCTGGCATGGTTCCCCTTCGCCCTGAATCTTATCAGAAATTAGATAAGGTAAATTTGCTATGAAAATTTCATCTTTAAAATAGATGTTTGAATGTTGACGGGCATTGCGTGGTCAATTTTCTATTTGAGGTGTTGTGATATTTGAATTAGATTTGTTTGATGTAATTCCTCAATGAGGAGGAGCTGCTATTGCTGCCATTTACGTGATATCATATCATGCATGATAGAGCAAGTTGATTCGTTTGTCATAATTTTTCATATGTGATATGGTTGATGCTGAAAAATATCTAGTGGTACTTACCTATTCTACGAAGTTTAGATAAACCTAGATGATTTTGCTATTATAATCATGTAGAACGTTCAAATAAGCTCTGTAGTTCCTTTTTTCTGTTACATGTCAACTATTTGCTAAACTTGTCTGATGTATTTGAAGATTGGACAAGGCACATATAGTACTGTGTTCAAAGCACGTGACCTGGACACAGGAAGAATGGTAGCTCTGAAGAAAGTTCGGTTTGACAATTTTGAACCAGAGAGCATCAAGTTCATGGCACGAGAAATACTAATTCTTCGTAGGCTTAACCACCCAAATGTTATAAAACTGGAGGGAATTATAACTTCTAAATTTTCATGCACCATGTATCTTGTTTTTGAATACATGGAGCATGACCTTGCAGGATTATCATCTTCACCAGATATTAAATTTAGTGATTCACAGGTTTGTCGAAATAAAATATCAATTACACTATCCATTCTTAAGAATTATTGATATGCATTTCGTTTGGGATAATTCACATCAATATTGAAGTCCATGCAATGCAGGTGAAGTGTTATATGCAACAGCTGTTATCCGGGCTTGAGCATTGTCATTCGCATGGTGTCATACATCGTGATATCAAGTCTGCAAATCTTCTAGTAAACAATGAAGGGGTCTTGAAAATTGCTGATTTTGGTTTAGCTAATTTCATTGACTCTAGTCGATGCCAACCATTGACCAGTCGGGTAGTGACTCTTTGGTATCGCCCACCTGAGCTTCTGCTGGGTTCGACTGAGTATGAAGCTTCAATAGATTTATGGAGTGTCGGTTGTGTTTTTGCTGAACTCTTTATTGGGAAGCCTATTTTACAGGGAAGAACCGAGGTAATGATTTTTGGTACTTCACTTTTACACTTCATTGTTAGTTCTCCCATGATGGTTAAATTGATGGAAACATCTTCCAATATTAATTGGGCGATGCACAACAGCTTCTATGCATACTTTTAGCCAATTTAATTTTGTTTGAAATATTTTGGCAAGTGAATAATGCAGGTGAATTACATTTTTCAAGACAGAAAACATCCCAAACTATGGGGTTGGAGAGACATATTTGGGATAAATCAACCTTGCAATAAACTAGTGGAATTTTGATGGACATTGTTCCAAAAAATGTAAATTCTGTTGAAAAATAGCCTTAGAAGTTTTTTAATTTCAACGGTTTATCTGCACCCTTATCAAGATATCTTTCAGAGTAACTTTTTTTAGGCATCAAACTGAAGGCATGTCTTACCAAATTTCTATGTACATATAATTTTCAGCAATCAAGTTTTAGTAACAAGCATTTTCTTATTATAAGGTGGAGCAAATACATAAAATCTTTAAGCTCTGTGGTTCGCCACCAGAAGAATATTGGAGAAAGGTTAAATTGGCCCATGCCACAGTTTTTAAACCTCAAAATCCATATGTAAGTTCTCTTCGCGGACAATTCAATTTTTTACCTGAATGTGCATTTGAACTCCTAGAATCATTCCTGTCTCTCGAACCATTTAAGCGTGGAACTGCAAAATCTGCTCTTGCCTCTGAGGTAACAATTTTTTTTTTTTTTTTTCATGTCATGACTTTCCAATTTGTTCATATATTAGATGCACTAGACATTCCTTTAATTATTTATAGTTACTAACCCATTCTAATTGGTTATGGATAAGATATTTATCTGTACTTTCACAACTAACCAGACTTTTTTCCTCTGATAATAATGTACTAACCTTTTTTTTTTCTTTCTCTTTTCTTATGAATGCAATTGCTCAGTATTTCAAATCAAAACCTTATCCTTGTGAACCATCAAGCTTACCTAAATATTCGCCTCATAAGGAGATTGATGTAAAAAGTCGCGAGGACTTACAAAGGTGTGCCTACTAGATTTTCAAAAATCACATATTTTGAGTTGGATTTTTTTGATGGTTTTTCTTTTCCTTTTAAATGTGTACAGCTAACAAATACAATTGTAAAGCAACTTTTCAGTTCTTGTTTTTTAACAACTGAACAGAACAATAACATGATTAGAAGTTAGAAATATAAATCTAAAACTGTAATCATTCTCCGATTTTTCAGGCAAAGGATTGCTACTAGAGAGCCTGGATATGATAATCCAAGGAACCCGTTGAGAAAAAACACGACAGAGGAGTTCAAAGGCCCCTGTAGAATTCCTCCTCGGCCAAAGGTTTGTTATATTTGATGGCTAAGACTTGTAAATTTTGTCATCTATTCTACAGTGTATATACTCAACTCATTTATTCAGGAGCAATGGACCAATAACTATACTTTCAATGCTGGAAAACATGGTTCTTCTAAAGAAAATGGTGAAAGAAGAATATTCATAAATCAACAGACTAACGAGAAAGAACATTACCTTTATTCTGGACCCCTAACAGCCTCTAATGTTAGCGGGTTGATATGGGCAAATAACTCGAAAGATGGCAACCTTTCAAATCATTCTTCTACTAGGCCTAATTCAAGACAAAGTGGTTCTAGGATGGATACATCATCAATTCTAAGGCCTAAGAATATTTTAGAGATGAATACACAAGCAATTAGAAGTACCATTAGTCACGAGGATTACAAAGACCACAAACAATGTGAGATTCATAAACAGGCTATGCTTAAGCAATGGATAGAAAATGACCATCACGCTTCATTTGTTGATTCTGATACCAACCAAGATTACAAAGAAGGTGTTATATCATCCGAGGAATTCAGTTTGGTTTCGGTAATAGTTACCTTAGTGTTTTTGGAAATATGCTGAGTAATACCTCAAAATTAATCCTCTGCAGAACTGTTATTTCTAAGTACCTTAAATTCTTACAAAGTTTACAAACTATTATCATAATATCTGACATCTCATTTTATAGTTTGTAAAGTATGTTACTGGTGTTATTTTGAACACGGTAAATTAAGCGTAGGGTTTTTATACTGTACCTTAATGTTGAGGTATTACTTTGCAATTTTAAATTACTCATTTGACTGCCTAGGAAACTTATTGATTTATCAAGGATTACTCTGCTTCAGGACTACCAAGACCATTCTGATGCATTAAGCGTAAACGAGTACATGGAGAAACATGAAAGAAAGCTTCGAGAGGCTGCTCCGAAGCCTTTTATTCAGAGAGGGTAATTATGGAGGCATAGTTTTACCTGAAATTCGATGTTAGCATGTCTTGTTACATACCTTGATATCTATTCCTGTAACATTCCAATGCTCATGAGGCTTGTGCTGGATGGCTCTTTATCTTCATGTAAGTTTGTTTGAAATTAATTACTGTATGTACTTAAATTAGATTCATATAAAATATTATAGTGGATGAATGATTAGAATTTTCACTCTTTCTTATTTATCCTTCCCATCCAATGGAAGAATTGTATGGAGCATGATTATATACATGCATGTATAGAATTACTATGTGCATATGAATGCATGTATGTTTCACGGTTATAGATAAAACTGATTTACAAGTGAATATAAACATATTGGAGTACCCAACAAGGGCATGTGTCTGCCACAACAGAAGTACATGGTAGAAGATTACATAAAAGATATTGATTACTGAGAAATATGATGATAGCACAAATGCACCTGCATTCACCCACATACACAAATTCAAGGTTTCTACAATTCTATCGTTCAATGTCCATAGATGTACTCAGAATATCATTGAAACCCACATTTTATGTAGTTTAAGTGACACATAATTTTACATAGTTACGGTTTAGGAAATTATATGTTGGTGGAGTTATCGATCACTATGAGTTCAACACAAACTCAAATCCATGATAAAATTATGATTTGTGAACAAGATGAACACTATAGTCATTTTTAAAATGTTTACATTAGGTAACTTATGTATGATTTGAAATACGTATGTAGAATACATATTCGTAGAAGTTTGAGCATAATTTGATGTAAATATGTAAGAGGATACATTGGTAGCTTCTATAAATCATGTTAGAGGAGGGCAAAAAAAAAAAAAAAACGTTTGTACCGAGAGAAAAATATTCATCTGTGGGTCATGTTCAAAAGCCTCATATATTTCTAACTGTTTTTTGCTTTTTTTTTTTTCCTTTTTCTTTTTCAGGCGGAGTAGTGAATTATATGAAGGAATGGGATGTGGACAGTAATCAAAATACAAGTCATTTATCAGTTTGCATGATATTTTGTAATCAGTGTAAATCGTATCTGACATTGGAGAATAGAGTATGTGTATATATATTTTTCTACTAGTGCAGGTGTATGAAGAGTGATTCTGAGAAATAGAAGATTTTGTGAACTGCTTATACATTCCTCATATTCATTGCTTTTTACTATTTAAAACTAACAACTGTAAGCCATGATGGAAAGTCTATGGTTATACTCT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275616.1	5.1e-198	probable serine/threonine-protein kinase At1g54610 isoform X1
Swissprot	F4ICB6.1	2.8e-156	Protein IMPAIRED IN BABA-INDUCED STERILITY 1
trEMBL	A0A5P1EFW9	3.7e-198	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G74330.1	47.55	2e-164	576		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03260	AT1G74330.1	694	306	15	1	646	1	684	47.55	2e-164	576
AfisC3G03260	AT1G74330.2	694	306	15	1	646	1	684	47.55	2e-164	576
AfisC3G03260	AT1G18670.1	648	269	13	45	647	72	704	49.23	1e-163	573

Ortholog group

Species	Genes
Allium cepa	g242861.t1
Allium fistulosum	AfisC3G03260
Allium sativum	Asa2G02632.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	106	390	232.3	5.5e-69

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000166	F	nucleotide binding
GO:0002944	C	cyclin K-CDK12 complex
GO:0002945	C	cyclin K-CDK13 complex
GO:0009615	P	response to virus
GO:0005829	C	cytosol
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0005615	C	extracellular space
GO:0005730	C	nucleolus
GO:0005794	C	Golgi apparatus
GO:0006397	P	mRNA processing
GO:0007089	P	traversing start control point of mitotic cell cycle
GO:0008285	P	negative regulation of cell proliferation
GO:0008353	F	RNA polymerase II carboxy-terminal domain kinase activity
GO:0016607	C	nuclear speck
GO:0019908	C	nuclear cyclin-dependent protein kinase holoenzyme complex
GO:0030097	P	hemopoiesis
GO:0030332	F	cyclin binding
GO:0043405	P	regulation of MAP kinase activity
GO:0043410	P	positive regulation of MAPK cascade
GO:0043484	P	regulation of RNA splicing
GO:0044822	F	poly(A) RNA binding
GO:0046777	P	protein autophosphorylation
GO:0048366	P	leaf development
GO:0070816	P	phosphorylation of RNA polymerase II C-terminal domain

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08819	CDK12_13; cyclin-dependent kinase 12/13	EC:2.7.11.22 2.7.11.23	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network