result

Gene information

Detail information of AfisC3G03358

Location

Gene	Chr	Start	End	Strand
AfisC3G03358	chr3	600901458	600902467	-

Sequences

CDS

Protein

Gene

>AfisC3G03358
ATGGAGGAACTTTCAAAAAAGATCATCAATTATGAACTCAAAAACAGATACCACAACAGTTCACTAAGTTCACTCTTAGGAAAAACTCAGGAACAAAACCAAACATGCAAGAACGTAAAGAATGGGACAGACAATACATTGACATTATTCCGAAAATATATCCATGACAAAGCTAGAAAAGCTCGGGCAATGTCAAATATAGAAGAAAATGAAGTCAATTGTGCAAAATTTCAAACTGAACTCTGCCAAAGTCTCTCGCCGCTGCAAGGAAATAATTCTATATATAGCCGCCCTACATTACTTCAGAAACAACTGCTCCCTAGGTAAATTACACATTCATGAATACCTGAACATTTGCAAAGTTTAATTAATTTTGTGGGTGTTTTAACACATCTTTTACGAACTTTTGTTCATAATTGCTTATTGATCAGTCTGAGCTCAGGACTAACAGCCAATGCAAGTTCTTCCATGGGACAACAGCTAACCATATTTTATTCTGGCTCTGTCAATGTTTATGATAACATTCCAGTTGATAAGGTAAAAAATAACACGTCGATATCTGTTTATTTATTTATTATCAAGTTATGAAATGCATATACTTATCAACAGGCACAGGCAATCATGCTTATTGCTGGAGAATGCTCATTAGGTTCTACAAACTCAAAATTAGACGATGCTACAGCCAACAAAATGCAAGCAGGTGACATTCACTACTTTTTTTATTTCAGTGTTCTTACGTCAATTTTAAAACATCACGAAGTTATAATGAATTTTCTTTTCACACCAGATCTTCCAATTGCTAGGAAGGCGTCCCTTAGGAGATTTCTCAACAAACGCCGTGACAGGTAAAATTTCATGAAATTCAACCATGGCTAACATCTGGTAACATCACTAATATGATGCTGAATTTTCTTCTTCTTTTATGTGTGATTTGCAGGATAGCAATGAATTCTCCTTACTCGGTCGAGCACTTAGCCAGATTCAAAGAAGACATCAGCACCCTATTATGA

Functional annotation

Database	accession number	e-value	annotation
nr	RWR72314.1	3.5e-26	protein TIFY 9-like protein
Swissprot	A2XD79.1	2.2e-09	Jasmonate ZIM domain-containing protein 11
trEMBL	A0A443N1D2	2.5e-26	Protein TIFY

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G70700.2	37.21	2e-12	69.3	JAZ9;TIFY7	TIFY domain/Divergent CCT motif family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03358	AT1G70700.2	129	55	2	98	200	92	220	37.21	2e-12	69.3
AfisC3G03358	AT3G43440.1	100	47	2	116	201	123	222	39.00	5e-11	64.7
AfisC3G03358	AT3G43440.1	74	36	2	124	193	45	118	45.95	4e-10	61.6

Ortholog group

Species	Genes
Allium cepa	g195456.t1
Allium fistulosum	AfisC3G03358
Allium sativum	Asa0G00889.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06200.11	tify	Domain	123	152	58.1	3.5e-16
PF09425.7	CCT_2	Motif	176	201	41.4	8.8e-11

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001101	P	response to acid chemical
GO:0006952	P	defense response
GO:0009725	P	response to hormone
GO:0044424	C	intracellular part
GO:0048583	P	regulation of response to stimulus
GO:0050794	P	regulation of cellular process
GO:0097659	P	nucleic acid-templated transcription
GO:1901700	P	response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13464	JAZ; jasmonate ZIM domain-containing protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network