result

Gene information

Detail information of AfisC3G03386

Location

Gene	Chr	Start	End	Strand
AfisC3G03386	chr3	607140168	607143185	-

Sequences

CDS

Protein

Gene

>AfisC3G03386
ATGGCATCATCAATTGCATCTATCGCTAGAAAGAACCCTCTTGAATCTATAGACCCATTAATCAATTTCAATAAATTTCATCACAATCACAAGATCAAAACTATAAGACAAGTCCTTCTCCAAGATTCCGACAACGAATTTGCAGACTCCCATTACATGAAAAAAGCTGATTTGATCGATCCTGTTCTTGAAGCAGTAAAAGAACTAGCTTCTGATCAATGCTCCATGGCTAGCCAGTTCTATGAAAGTGCTCGCAGCAATAGTTTTTCTCAGTACATTGAACCGGCAAAAGATAGTTTTACAACTGCCCGAATTTCTATGGCGACTACTGCAGCAGGCAGTGTCAAGAACGTAGTGGAGGAACCATCAGGCAGTGGTTCGGTCAGTGGATCGGGCAGTGGTTTGGGCAGTACAGGCAGTGAGATAAGTGAGGAGACTAGTTTGTCATCTGGGATTATCAGTACATCATCAGGGCTTAACAATAACGCAAATAAGCCTCACAAAGGCAATGATTCAAGATGGGAAGCGATTCAAACTGTACGGGCAAGAGACGGGAGTATTGAGTTGAAGCATTTTAGGCTGTTAAAGAGATTGGGATGTGGTGATATTGGAAGTGTGTACTTAGCTGAATTGAATGGCACACATAGCTATTTTGCTATGAAAGTTATGGATAAGGACACTTTAGAGGCGAGAAAGAAGCTTCCGAGAGCGCAAACGGAGAGAGAGATACTGCAGTGTCTTGATCATCCTTTTTTGCCTACGTTGTATACACATTTCGAGACTCCAAAGTTTTCTTGTTTGGTTATGGAGTACTGCCCTGGTGGTGATTTGCATGCCTTGAGGCAGAGGCAGCCAGGGAAGTATTTTTCCGAGCAAGCGGCTAGGTATGTTTTTTTGATTAATTTCTTGATTAGATTATTTTTATGCAGTTATGATTAGATCAGTTCTTGTGAATTTTGCTCTGCCCTTCCTTCCATATACCGTGATCTCTTGATTTTTAATCCGGTAACTAGTGCTAAAACTATTACAAAAATTACTACTGCATAATGGTTGTATGCTTTGTTATGGTACATTTTGTTCTCACAATGGCATACAATACAAATGGCTATTGACCTTAGTGTGTATATGAGGTCATAGATGTTATATCAAAGGTGCCATGAAATTATAGTAATACGAGAATTTAAGTGAACGTTTATTTTACAACGCTTGATGTATTGTTGGAACCTACACTAATCCTCAGCAGAACGAAATAGTCCTTAATCCTTATAAACTGGCATGATTTCGGGATTAGTAAGTCTTATCCTGAATAAACGGACTTGATTTGGTGTTTTTATTCAGTTTTGCACCTTTAGCGTGGAAGATTAGAAGGTTTGATGAAAGGTCATGTTTGTTTGTTTGTTGGAAAGAGATTGCTTACACTACCTATCCAGCACCCCAATATATTTCTGAGCTTTATAATTCCAAATAAAACCAAATTTTACAGATATTTTCTAATGCTATTAAAGATCGTTCTAAAACTAAAAAACTTATATTTTTAGTAAGTTAGAGAGCAGTAAGTTCCCATTTTCTTCTGGGTCTTTTGTTTGCTAGCAATGGCATATAATTCGGTCCACTTTTTCCACTTTTATTAACTCTCTCCAACTGTTCCAAAACTGCCTAGCTGTATCACTGTACCACTTCAAATGTTAATTAGGGAAGTGGGGGTTCATTTTTGTTGATGACAACCCAAACGTGCTCACACATTCTAGTACTATCACTCAATCAATCTGCTGCTTTATATGCATCTCTTCACTCCACGTTTGTCAAGTACACGTTACAGCTAAATAACATTTCTCACATCTCTTGCTTATGTCGACAACATGATGGACATTGCCTACATAAACTGCCTACTTTGATGGACCCTATATGTTGGAAGTAAAGCAAGATATAAAAACATACATTGGTTGGGCATGCTTGAACTGTATGGGCAACCAATAAATGTGTCATATATAATAGGAACTTAGCTATGGAACTTATATTTAATAATTGATTCAAATGTAGGTTCTATGTGGCTGAAGTCCTCCTAGCATTGGAGTACCTGCACATGCTAGGCATAATATACAGAGACCTGAAACCTGAAAATGTACTAGTCAGAGAAGACGGACACATAATGCTTTCTGATTTCGACCTCTCTCTTAGATGCACTGTATCTCCTACACTAGTTAAATATTCCAAGTACGCCACCTTTGACAGCAATGCATCTTCCAACTACTGCTCTCAGCCAGCGTGCATCGACTCACCTGCTTGCATGCAGCCTGCCTGCTTTGCTCCACGCTTTCTCAAAACTTCCAATCAAAAGACAAGTACCAACGACTTTGCATCGTCATCCTTCCGAACACTTCCGGAACTTCTAGCAGAGCCCACGAGCGCCCGCTCCATGTCCTTTGTTGGGACCCATGAGTACCTGGCGCCAGAGATAATAAAAGGGGAAGGGCATGGAAGCGCGGTGGACTGGTGGACTTTTGGGATATTTTTGTACGAGCTGCTGTTCGGGAAGACTCCCTTTAAAGGGTCTGGGAATAGAGCGACTTTGTTCAACGTTGTAGGGGAGCCACTGAAGTTTCCAGAAGCTCCCAACGTGAGCTTTGCCGCAAGGGATTTGATAAGGGGGCTGCTTGTGAAGGAGCCTCAGCAGAGGTTGGCCTACAGACGTGGGGCCACAGAGGTGAAGCAGCATCCTTTCTTTCAGAGCGTGAACTGGGCTTTGATTAGGTGTGCAGTCCCGCCTGAAGTTCCTAGAGTTCAGGTTAAGAAGAATGGATCTGTGGTGGTTGATGTGGAGACTGATGGTGCCTATATGGACATGGATTTCTTTTGATGTAGATGTATGTTGTTTGTATCTTTCGATTCTTTCATTTGATTTAAGATGGTGTGTTGTTTGTTTACACTCACAAGAGTTCTGTATGACATCGATTTGATCTCTCTGTAATGAAATGATGAAATAAACTGTGTTTCCTTCTTCAGTTTGTTCATGTTTAT

Functional annotation

Database	accession number	e-value	annotation
nr	ONK56809.1	1.4e-180	uncharacterized protein A4U43_C10F13230
Swissprot	Q9SUA3.1	9.7e-166	Serine/threonine-protein kinase AGC1-2
trEMBL	A0A5P1E2X2	1.0e-180	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G47750.1	68.39	0.0	637	D6PKL2;PK5	D6 protein kinase like 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03386	AT5G47750.1	465	128	7	97	552	102	556	68.39	0.0	637
AfisC3G03386	AT4G26610.1	440	113	7	137	566	77	506	69.77	0.0	631
AfisC3G03386	AT5G55910.1	448	113	6	137	566	62	498	68.30	3e-177	618

Ortholog group

Species	Genes
Allium cepa	g497034.t1
Allium fistulosum	AfisC3G03386
Allium sativum	Asa2G02828.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	193	347	131.1	4.2e-38
PF00069.22	Pkinase	Domain	420	523	76.9	1.4e-21

Gene Ontology

Accession	Ontology	Name
GO:0004674	F	protein serine/threonine kinase activity
GO:0035556	P	intracellular signal transduction
GO:0005524	F	ATP binding
GO:0005525	F	GTP binding
GO:0005730	C	nucleolus
GO:0006468	P	protein phosphorylation
GO:0008728	F	GTP diphosphokinase activity
GO:0008893	F	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity
GO:0009507	C	chloroplast
GO:0009734	P	auxin-activated signaling pathway
GO:0009860	P	pollen tube growth
GO:0009882	F	blue light photoreceptor activity
GO:0009908	P	flower development
GO:0009925	C	basal plasma membrane
GO:0009958	P	positive gravitropism
GO:0009986	C	cell surface
GO:0010150	P	leaf senescence
GO:0010540	P	basipetal auxin transport
GO:0015970	P	guanosine tetraphosphate biosynthetic process
GO:0015979	P	photosynthesis
GO:0019901	F	protein kinase binding
GO:0040008	P	regulation of growth
GO:0042594	P	response to starvation
GO:0048766	P	root hair initiation
GO:0048767	P	root hair elongation
GO:0048825	P	cotyledon development
GO:0080167	P	response to karrikin
GO:1901981	F	phosphatidylinositol phosphate binding
GO:2000114	P	regulation of establishment of cell polarity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08286	E2.7.11.-; protein-serine/threonine kinase	EC:2.7.11.-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network