Detail information of AfisC3G03395


Location
GeneChrStartEndStrand
AfisC3G03395chr3609214754609247777-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020261496.10.0e+00uncharacterized protein LOC109837594 isoform X1
SwissprotQ84W56.10.0e+00Protein EMBRYO DEFECTIVE 2746
trEMBLA0A5P1F7G40.0e+00Myb-like domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G63420.169.340.01203emb2746RNA-metabolising metallo-beta-lactamase family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag212413.t1
Allium fistulosumAfisC3G03395
Allium sativumAsa2G02824.1
Arabidopsis thalianaAT5G63420.1
Oryza sativaLOC_Os02g33610.1; LOC_Os02g33610.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF12706.4Lactamase_B_2Domain10624141.87.7e-11
PF07521.9RMMBLMotif43746827.81.7e-06
PF13837.3Myb_DNA-bind_4Domain76584859.92.2e-16

Gene Ontology
AccessionOntologyName
GO:0003676Fnucleic acid binding
GO:0004521Fendoribonuclease activity
GO:0004534F5'-3' exoribonuclease activity
GO:0046872Fmetal ion binding
GO:0006364PrRNA processing
GO:0009507Cchloroplast
GO:0009658Pchloroplast organization
GO:0009942Plongitudinal axis specification
GO:0060918Pauxin transport

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K12574rnj; ribonuclease JEC:3.1.-.- RNA degradationko03018

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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