result

Gene information

Detail information of AfisC3G03533

Location

Gene	Chr	Start	End	Strand
AfisC3G03533	chr3	633282396	633286051	-

Sequences

CDS

Protein

Gene

>AfisC3G03533
ATGAAGAAGATACTAAATCAATGTCGAGGAAAAGCTGATGACTTTCAAGAGCGATTTAATTATTTGATAAAACGAGGACTTGATGCAAGTGAAGTTTCTCATATCATAATAAGGTTCCCAAGTATCTTGAATCAGACGATAGACACTCTTGATCAGAAGATAAATTTTCTTGTAACTAACTGGGGCGCTCCCTTGAATTTGGTCGTAAGTTTTCCACAGTATTTGGCATTTACCATTCAAAGAATCAAGGTTAGGTTCTTGATGTATACTTGGCTAAAGGATAGAAAAAAGGTTGGGAATATAAGAATGGCTACCGTATTAACATCTTCTGATGTTATATTTAGGCAACGGTATATCAACAGGCACCCTGAGGGTCCTAAAATGTGGGAAGAGTTTATGAATTTGTGTTATACAAATTAATATTTGTCTAATTTGTATTGATCATCGAATGAAAAGCTTTTTCTTTATCATATTATATGAAATCCTTTTTGTGATTAGAAGGGGCTGCTCCGACCTTGTGTTCAGGGGATCCGTGAATAAGTGAAAGTTGCACACAATGCATTTGTGGCGACCTTCCCATTCGGGGTTCTTTCTGCTTCCCTTAATAGATTTTGAAATGATGAATTTCCAGTTGATTTTTCAAACATAAAATAGTTCCTCTTAGTGAAAAAAAAGAATTTTTGGTTGATTTCTTAATTGATTTTTTCATGTACTTAGCGTTAATGAGTTACCATAATTCTGAAAGAGTAAAATGAAATACCATAATGAGTTATCATAATTTTACCGTGAGTTACTACAGTTTTTACAAGTAAATATGACTATGTGCACTTTTTCATAAAAGCTTTAAAATACTCCTAATTTCGTTTCTAATAAACATTATTTTGCAAAAGCCAATTTGAAGAACACCATTTTTAGAATAAATCAATTCTACAGCCTGAACCTTCTTATTTTCGCATGTGTAATTATATCTTCTTCCCACTAAACCCTTGCTAAGATATTAAAGCATTTTTAATGTCATCTCCGTTATCTATTTTGCCTTATAAGAAATCATCATCTACCTTATGAGTTATAGCAAATTATGACTATCAGTAGTTGATATCCATAAAATCAAAAATAGATAGTTATGCCCCTTGCTTCTTTCCTCTGCATTCTATCACCAGTAACTTCTTCATTGGTTAATTTAGTGCATTCTCATTTTTATTAGGTATATTATATATAGTAGATTCTGCACTTTTAATTTTCAATGTTTACTTGAGTTTGTCAATGTATGAGCACTTGAATTCCACTCACTACACCATATAAGCATGAGCTAACTACATGAGTTTGCCAGCCAGCCAGTGTTTGATTATCTTTTTGTTTAATTAGAAGCTAAATTTATTTATTTTATATTAAATGCTTAATTTGTTTATCCTTGATTTAACTCTTGTTTTGTATTTTTGTTCAAGATCTTGTTATCTTTTTGTAGATCGTCTATATTGGATACTTTGCTCTACCTGTTTCAATTGTTGCATATGTGAAGATAAAAGATAACTTAAAAAACAATAACTATCAATACAAGTTCAAATTATTTTATTGTAACCATACATTTATTCATTGACTATAGCGTCGCAGTAGTGTAGACATATTATGGTTATGATCTAATATTAGAGTTCTTGATTCATTCCAGGGAATTACTTTGAAGTTAAAACCGGACTCAAAGGTTGCACTTGTTGGACCAAGCGGTGGTGGAAAAGTAGTTATTCTTACTGAATTTATTTTATTTAACAATACCATGTATAGTTGTTATATTTCACTATCATTTGCAGACTACAATAGCCAATTTGATTGAACGGTTTTACGACCCTCTCAAGGGAAAGATTTTGCTTGATGGAGTTCCCTTGGTTGACATTTCACATCAGCATCTCCATAAACAGGTTTGTCTTATTTAAAACTAGCACATAAGCACTCATAATGCATGCAACTACATAAATAATTTGCTGCATGTTATCCATTTTACATTTTCCTCCACTTCTCCATTTTTTTAAATTTCCAATTCCACGGAAATATAGACATTTAATCAGTGTTTCTATCAATTAATTTTTTTTATTTTCATGACCTTTTTCAACAGCTTTCAGCTATTTATGAGAAAAGATAGTTTCGGCATATTCGTGAATCACGGTTGAAATCACGAATTCTAGTTATTAATAGCATGTGTATATATTACATATACATACATGCATGATATATATATATATACCACATGTGCGTATAGATATATTAAAAATCCACCACCACTTTTGCTTTGCGCCTCAACCTACTCTAATGAATTTGCATAACCAACTACTATTGTTAATATCAACCACATCATTAATTATCATTATTAATTATTGTCATATCAGCAGCATCAACTATTATTTATTAATTGAATTCAATATACCACATTGCTGTAAATTCTTGCTGTCATATCCTCCAATTTACTTAATTTATGCTAGGATTAGAGACATTTAGGTAAATTCTAAGTGTTTACAAGATAATCTTGTTTATATATTTTGAGAAATACGTTACCTTTACAATACTGCGTTCATTAATTATACACTAGTATGTGCAAAGGATGTGCTAATTTCCAGTATAATAATACATCATTATATCCCCAAATATAAAACTTCTAAGAATACTATTTGGAAACATAATGTAACATGTAAAAAACACAGGTTAGCATCGTGAGTCAAGAACCCATTCTATTCAACTGTTCAATCGAAGAAAATAGTGCATACGGCCTAACCGGTAACACTAGTAGTGCCGACATCGAAAATGTTGCAGTAAGTTCTCACTTATCTTTTTTCACACTACATCAAAAATCATCTTGATTTTGTTATTAACAATGCTGTGTTGTAAATGGCAGAAAATGGCAAACGCTCATGAATTCTTATCAAAGTTTCCTGAAAAATACAAAACTCATGTTGGAGAAAGAGGGGTAAGGCTATCGGGAGGTCAGAAGCAAAGAATAGCCATTGCTCGAGCTTCGCTTATGAATCCACGTGTTCTTCTATTGGATGAGGCTACCAGTGCTTTGGATGCCGAGAGCGAATATTTAGTACAGGTATGTATGCATATTGCATATTCATACAATTTTCAAAACTAATTACAAAAGCTTATCGCTTTCTGCATACCATACTTGTCAAATATGAAACCACAGTCTCTACAGCATAAGTAGGAAGCTTTTTTTTTAAAAAATAAAATAAAATAAGAGTGGTACTTTATTCAAGAAGAACACTCATTTTTGGTGTTTTGCGAGTTCGAATTCATGACTTCTTGAGGTAGCGGTTCTTGATGAAAATTGTCATTGTTATGATTAGTGTTCAAAAGGGTTTAAACCTGTAATAAGTTTTGAAAATTGACCTAAATATTTTAAAAAATGAAAAATCCAAATTTTGAATTTGAATTTTAAAATGAAATGAATTTGGTAGGATGCGATGGACTCATTAATGAAAGGAAGAACAGTGTTGGTGATAGCCCACAGGCTTTCGACGGTTAAGAGCGCAGATACAGTTGCGGTTATATCGGATGGTCAGATAGCAGAGAGTGGGACACATGATGAACTTTTGAATAAGAACGGCATTTACACTGCGTTGGTGAAGAGGCAGCTTGAAGGTGGTGGTCCTAAAGTTGAAATCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268705.1	5.6e-96	ABC transporter B family member 25
Swissprot	Q9FNU2.1	2.8e-92	Protein ALUMINUM SENSITIVE 1
trEMBL	A0A8B7BJK3	7.6e-95	ABC transporter B family member 25

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G39040.1	82.50	6e-94	340	ABCB27;ALS1;AtALS1;ATTAP2;TAP2	transporter associated with antigen processing protein 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03533	AT5G39040.1	200	35	0	83	282	437	636	82.50	6e-94	340
AfisC3G03533	AT2G36910.1	200	83	2	83	280	409	607	57.00	6e-60	227
AfisC3G03533	AT2G36910.1	200	95	2	83	280	1065	1263	51.00	2e-53	206

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	15	94	49.9	1.9e-13
PF00005.24	ABC_tran	Domain	83	210	85.3	4.8e-24

Gene Ontology

Accession	Ontology	Name
GO:0000139	C	Golgi membrane
GO:0000325	C	plant-type vacuole
GO:0002481	P	antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
GO:0002485	P	antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent
GO:0002489	P	antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent
GO:0002591	P	positive regulation of antigen processing and presentation of peptide antigen via MHC class I
GO:0043190	C	ATP-binding cassette (ABC) transporter complex
GO:0005516	F	calmodulin binding
GO:0005524	F	ATP binding
GO:0005730	C	nucleolus
GO:0005743	C	mitochondrial inner membrane
GO:0005774	C	vacuolar membrane
GO:0006855	P	drug transmembrane transport
GO:0008361	P	regulation of cell size
GO:0008559	F	xenobiotic-transporting ATPase activity
GO:0009506	C	plasmodesma
GO:0009624	P	response to nematode
GO:0009637	P	response to blue light
GO:0009640	P	photomorphogenesis
GO:0009735	P	response to cytokinin
GO:0009958	P	positive gravitropism
GO:0010044	P	response to aluminum ion
GO:0010218	P	response to far red light
GO:0010315	P	auxin efflux
GO:0010328	F	auxin influx transmembrane transporter activity
GO:0010329	F	auxin efflux transmembrane transporter activity
GO:0010540	P	basipetal auxin transport
GO:0010541	P	acropetal auxin transport
GO:0015421	F	oligopeptide-transporting ATPase activity
GO:0016324	C	apical plasma membrane
GO:0031410	C	cytoplasmic vesicle
GO:0032376	P	positive regulation of cholesterol transport
GO:0032592	C	integral component of mitochondrial membrane
GO:0032782	P	bile acid secretion
GO:0035672	P	oligopeptide transmembrane transport
GO:0042803	F	protein homodimerization activity
GO:0043481	P	anthocyanin accumulation in tissues in response to UV light
GO:0046581	C	intercellular canaliculus
GO:0048443	P	stamen development
GO:0048527	P	lateral root development
GO:0048767	P	root hair elongation
GO:0051384	P	response to glucocorticoid
GO:0055088	P	lipid homeostasis
GO:0060919	P	auxin influx
GO:0061092	P	positive regulation of phospholipid translocation
GO:0070062	C	extracellular exosome
GO:0090554	F	phosphatidylcholine-translocating ATPase activity
GO:1901557	P	response to fenofibrate
GO:1903413	P	cellular response to bile acid
GO:0090691

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network