result

Gene information

Detail information of AfisC3G03561

Location

Gene	Chr	Start	End	Strand
AfisC3G03561	chr3	636776129	636778391	+

Sequences

CDS

Protein

Gene

>AfisC3G03561
ATGGTATTTATTATTATTTTGTTTCATGTTCAAGCCCAAGAGGAAACTCACTATACAAAGCTCCTTATCATCCACTTTTTTTATGCCATCATGAAAAGCAAGCTGTTGGTTTTCCTCAATTTAGCACACATTTTTACTGTATGCACCATATTGTTTTATAGTGAACATGTCATTGTGTTCAAATCTGCTGGTATACACACATATATATGTTGTATACACATATTTTATAAATCTGCAAACTTCAGACCGAGGATACATATTACTCAAGTTATGTTTATAAAACAATTTATTTGAGTTATAAATGTGCAGGATAAAATTGGTACAACTATAAAGTCAATGGTTGATTAAGGTTCAATAAGAATGATAAGGTAACAGGGATGATAAGGTAATAGGGATATAAAGTCGTCGAATATTCAGTTGGACGATTCGAATGGGGCTAAAGTTTTGGATTTTGGGCTTTCGATACTGACTCCGGACCCAAACCATGCTAACGAAACAAATGGTTACAATTATCCGCTTTCGACGGCAGGTGCAATCGAGTACATGGACCCGGAGTATTATAGACTGAGGCAGTTGACTGCAAAAAGTGATGTGTATAGCTTTGGGGTGGTTCTATTGGAGATACTTTCGGGGTGTAAGGTGATACAGAAGTACGAAGAGAGTGGGACGCTGAAAAATGTGGTGGAGTATGCTGTACCGCATATACAGGCTGATAACATACATCATGTGCTTGATGGAAGAATTGCATTGCCTACGCCTGGGGAAATGGAGGCAGTAGCATATGTGAGTTATTTGGCAACAGATTGTGTGAACCCATAAGGGAGGGATAGGCCGACTACGACGAAGGTTGTTAATGGGTTGGAGCGGGCTTTTGGGGCGGTTTCCAATCCGTTATCTCCTTCGAGATCGTCTATCATGGTACGGTCGAATTGACTTTTTTTTTATTTGTAAGTGTGATGTGCATAATTTTTTGAATTTGGGTTGTTTTATTGTTGTGAAAGATCATACGAAAAATGCAAAGAAATTGTGATGATACTTTTGATTATTTATTTGTTATCCATAACTGCTTTTTAGCAATGCCAGAATTTTAGAGTTGAATTTACAAACTAGCCTTTTTTGGAGTATCATATCTATAGAGTTGTGTTTGAAACTAAGATCTCCAACTTATATAGGAACAGATTGAATGTGTTATAATAATGATATGATGACAAACTCGTTCTTAGGTTAGGTTCAACAAAGATACAAGAAGATTATAGGAATGGAGAATTATAAACAGACATGAACTTTCAAATGGGTGGGGAATTGACTAGGATTATAAGTGGTTTGCTACCAACTTTTGGTGCAACTTATCCATCTATGACCAATTATTTACATATTTTCTTATATTATACTTGGTCATCTAAATTATTTACTTATGGGGATGCTACCAACTCCTTAATATAAATTAGAAGGTACTTGACCAATGATTTACTACCGCAGCTGTTGCCTAATTCTCATACTTGCTTATTCTATATTACATGACTCTTTTTATTTTTGCATTATAAGCAAAAATTTCTCCAAACTAGTGACTACAACACGAATTATATAGTTGTTTGGTATCTCCAACTGTCAAAGCACCCTTAATCGGTGAAAACAGCCAACTGTCGAGCGAATGAACGTCTATATGCAAGAGTCCAGAGATATGTATTTAATAAACGCTCAAATATGTTTATTAAATCCTTGGCCAAAAAATTCACTCTCATCCCTGTTACCTTATCATTCTAATAAAAAAAACAATGAGATGTTGTGTTGAAGTTGGTCGAGCACCTATGTAAGACTTATGTATTCTAGAGCAGCTTCTAGAATACATAACGTATTGAACCTTAATCATCCTAGTTTCTGATATTCTATTGAACAATTATGGGTTTTAGGAAAGTAGTTGATAAACATGTATTCCCTCCTAGTTTCTGATATTCAATTCACTGGATTGACATATATTCCCCTGCCTGTCTATTTTCAGGTCCCTTTCGTTGAAGTTAATGCTCTTATGTATACTTTGAAAATGAGGCCTTTAATGTTTTCGGTATGTTCTTTTTTATTTCATTACCATTTTTTAAATACATACACATCAGTCATTACATGCTACTGAGCTGCTTAAAATGTGAGCAATGTGGTAAATTTCTAGTTGCTGGAAGAAAACTAGCTGATAACTAATCTAAATGTGAAGAGAGAAATATAAAAAGGAAAGCAAGATAAAACTGAAACCAAGGTAAACGCATAAAAC

Functional annotation

Database	accession number	e-value	annotation
nr	NP_001169098.2	3.1e-41	uncharacterized protein LOC100382942 precursor
Swissprot	Q9FIJ6.1	1.2e-29	Protein CRINKLY 4 RELATED 4
trEMBL	A0A811R267	1.0e-41	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G47850.1	52.24	2e-32	134	CCR4	CRINKLY4 related 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03561	AT5G47850.1	134	59	2	1	134	586	714	52.24	2e-32	134
AfisC3G03561	AT3G59420.1	134	56	4	1	132	648	768	47.01	9e-25	108
AfisC3G03561	AT3G55950.1	139	69	3	1	133	638	774	44.60	2e-19	91.3

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	2	89	43.4	2.2e-11

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0004674	F	protein serine/threonine kinase activity
GO:0030139	C	endocytic vesicle
GO:0009786	P	regulation of asymmetric cell division
GO:0009793	P	embryo development ending in seed dormancy
GO:0009986	C	cell surface
GO:0010311	P	lateral root formation
GO:0016043	P	cellular component organization
GO:0042803	F	protein homodimerization activity
GO:0046777	P	protein autophosphorylation
GO:0048829	P	root cap development
GO:0050896	P	response to stimulus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network