result

Gene information

Detail information of AfisC3G03580

Location

Gene	Chr	Start	End	Strand
AfisC3G03580	chr3	639856759	639861211	-

Sequences

CDS

>AfisC3G03580
ATGGTAATCAGTAACAGCAATCAAATCGTTGAAGCGCACAACCAGAGCCCTGCAAATTCAGCCAAGCTTCAGTCGCGGAGGTCGCCGTGGGGAACGCCGAAGATTTCCGGTGGCCAGTCGTCTTCAACCACGGGGAGCGCTGGTGGTTCACCATCGGCAACTCCTCCTAGTGATAATACCTTTGTTAGGATGAATCAGCTTGATATTCACGGTGATGATGCTGGATCTTCTCAAGTAGCTGTTAGTGGGAAAAAGAAAAAAAGAGGTACAAGAGCAGCGGCTGGTGACAAAAGTGGAAGGGGACTCAGGCAATTTAGCATGAAAGTTTGTGAGAAAGTTGAAAGCAAAGGGAGAACTACATACAACGAGGTTGCGGATGAACTTGTTGCTGAGTTTTCAGATCCAGGCAACAATATCCAAACACCAGATCAGCAACAGTATGATGAGAAAAACATAAGGAGGAGGGTTTATGATGCTCTAAATGTTCTTATGGCAATGGATATCATCTCAAAAGATAAGAAGGAGATTCAGTGGAAAGGTTTACCTCGTACTAGCGTAAATGACATTGAAGAATTGAAGGCAGAGCGTGTTGCACTGAAAAGCAGAATTGAGAAGAAGGCTGCATATTTGCAAGAATTGGAAGATCAATACATAGGCCTGCAAAACCTGGTACACCGAAATGAACAACTATATGGAAACAATCCTCCTGGTGGCGTTGCTTTACCTTTCATCCTGGTTCAGACTCGTCCACATGCAACCGTGGAGGTAGAAATATCGGAGGATATGCAACTGGTGCATTTTGATTTTAATAGCACCCCATTCGAATTGCACGATGACTCATATGTCCTTAAGGCAATGAGATTCTGCGGTAGAGAGCAGCAAAATGGAACTGTGGCTCATGAGTCAATGGTCAATGGAGGGGAGAGCTCGAGCTTGCAAGCATCTATGCTTCCACCTCAAATGCCGCAACATGATCCCATGAGGCCCTGTTCCTCTGCAATGGTGTCCAGTTCACCTCAAATTCCAGGCATATTGAAAGCACGCTCGGTATTGAAGAATGAACACTGA

Protein

Gene

>AfisC3G03580
CAAAACTACACAAAATCGCATTCATTCATCTCTCCCTCTCTTTTCCTTTTCCTCTAAAGGAACTTATTTAGGGTTCTTCAAAGTCTTAAAGAACAATTAAAATAAAAAATAAATGGTAATCAGTAACAGCAATCAAATCGTTGAAGCGCACAACCAGAGCCCTGCAAATTCAGCCAAGCTTCAGTCGCGGAGGTCGCCGTGGGGAACGCCGAAGATTTCCGGTGGCCAGTCGTCTTCAACCACGGGGAGCGCTGGTGGTTCACCATCGGCAACTCCTCCTAGTGATAATACCTTTGTTAGGATGAATCAGCTTGATATTCACGGTGATGATGCTGGATCTTCTCAAGTAGCTGTTAGGTAATATAGAAGGATTTTTTGTATCTTTTTTCTGATTAATTTTTTGATTGGTTGTTGTTGACACAAAATGCAGATTTGGATTATGAATATTTTTTGCAAATTAGGTATTTATGTGTAAAATGGAGATTACTTATGTTAGATTGTTTATGTTAATCGATAGTTAGTATACAAATTATGAATTATAACGGGCTCTGGCTTGCACATTGGCACGTTAATCTAAAGACAGTGTTTTGTGTGTGTTTTTTAACCAATGTTAATTCTATACAAAGTACAAACCCTCATAAGCGCTGTATATTTACACCTTACTACGTTAGTATTTATACGTAGTTTGTTATTGAGAAGAGTTGTTTTGTCTTACTACTACCGATTGAAATTGACCCATGTCACAGTGGGAAAAAGAAAAAAAGAGGTACAAGAGCAGCGGCTGGTGACAAAAGTGGAAGGGGACTCAGGCAATTTAGCATGAAAGGTGAATTTACTCTCTTACATTGTATAAACTTCATCCAAATCGATTGGTTATTTTACTTTGGTTGATGGTCTTTAGTTTACTTACCCTGCACCTCCTTAATATCACTGAATACTGCTAGCATTTCCAAAGTTGAAACATAGCATTCTTTATTTATGTATTTAATGTCCTTTGGTTTGTGTAGTTTGTGAGAAAGTTGAAAGCAAAGGGAGAACTACATACAACGAGGTTAGATATGATTTTCACTTCCCTTTCAATTCATCTGTGTTTGTTATTATTAAATGTCTTGTATTCTGAACGGTTAGCTTGTTTGGGTTGTTCAGCAAAATCCCTGCTAGTTTATTCTCAATGAAACCTAGAATTTTTTTTATGGGCACATACTGTGTATTTGAAGTTAAAATTTTTATTACAATAGATTATGGTTTCAATGTTTCTTTTTTAAAATGTTCTGTAATGAAGACAAGTTATGTCGTCAAAATGTCAATGTGCCAGTTTGCAACCAACCAAAAAAAAAGTTCATTTAGCTGCAGTTGTATTGTAAATTACCGCATTATGGGTGTGTTTGCAGTAAAGTAATTCCCCATTCCTATGCCGCTGGAACGAGAAATCATTCAAAGATTCTCCTTTCCCATGAAGTAGAAATTTTGATCATTTTACGTAGGATGCATCAGACACATGCACCATTTCCGGATTGAAACTTACCGATTCACTCCTTCCTCCTCCCATAACACTAATTTTAGAAAAACTTAAAACAATTAAAAAACTATTATAACACTAGATTAATAACAAAGTAAATAAAATACAAACAATCATTCTTCTTTCAAACCCCAAAAGCACAATCTCCTTTCGCTTCCTGTTGTCCTTTTGAATTCATTTCAAATTCTCCTCTCATAATCTTCTTTTGCTTCATAAAAAACGCACCATATGTTTATTTGACGTACAATTTTTAAATAACTTTGCCATCTGCAGGTTTCCTATCTTCTGTTTTAACATATGCAAATGACCTGTACAATTTCTTTTCTTTCTGCTTTTCTAATTCTACTTTTCAAACACAGAACAATAATTGAACTATCCCAAATTTGCCTAATCTTTAGTAGTTAGCATTCTGGTGTTTCTTGCTTTTCATATTTTGAATCGCAAATTTTATTGCTATTAGGTTGCGGATGAACTTGTTGCTGAGTTTTCAGATCCAGGCAACAATATCCAAACACCAGATCAGGTAAATTACTTTTCCACTATCTTGAGGTGCAGCACTATGTATTCCTCAACACAAATGTTCCCGATTTGCAGCAACAGTATGATGAGAAAAACATAAGGAGGAGGGTTTATGATGCTCTAAATGTTCTTATGGCAATGGATATCATCTCAAAAGATAAGAAGGAGATTCAGTGGAAAGGTTTACCTCGTACTAGCGTAAATGACATTGAAGAATTGAAGGTTTGTCTCTTTTTTTCTCCTCTGTATGCCCGAAAGCTTTCTACTTAAGTTACAAAAGAACCATTATATGCTAGCATATATCTAATCGCCTAATAATCTTACTTGGATCTATTGATATTTTAGGCAGAGCGTGTTGCACTGAAAAGCAGAATTGAGAAGAAGGCTGCATATTTGCAAGAATTGGAAGATCAAGTAATTCTTGCTTATTTGTTTGACTAAGATTGCTATTGTATTCATAGTTTTGTGATTCTATGAAATATAAATGCATGCTGCTTTCATTTTAAAGCGGTTGCTATAGCTTGCTTCTTATTATATATATGCATATATGCTGTGGGCCACCAATATTTGAGTAATTGTGTTATCTCCAATTAATCAAACTCTTAACATCTCCTACAACCCATATGAATCATAGAGTTTTCCATATAACCTCGAACTTTATACCATGGAGGTAGTACTCATACCACTTTCACTTTGAATAAAACTTGTTAGCAACTAGATGCATGAATTGGATGACTAGTGTAGATCATCTATATTCCAATGGTATCTGTTTAGTTTGCCTATGTGACAATGCACTCATACTAGAATTTTGAAATATATGCGTATGTAATATATCCTCCTTGTATATATAATTATATTTGTGTGTGTGTGTGTGTGTGTTAGATAATGGCAATACTATAAAATAATACGTATGTACATATAGGATGCATGAATGAATTTTGTTATGATCTGGCCAGATTGACCGATGATTTGATTTCAGTTTTAAGCCGTGAAATGCATTGTTAGCCAATTTGGGTTGAAGGTTAAAATTTACCTTGAAACTGCCAAGACTGCTTGCCTATCATTGAATCAGTTGAGTTTTGGTAATTAGGTTAAGAATCCAATGGGTTGTCTGTCCTTGGCAAGACAAAGGATCACAACGACAAGCACACCTCTTGCAACATGATCAATATGCATTATACCTGAATTATTCGTCTAGGGGTTAATATACTAAAAATATTTGGTTTCCTTTTAAGTTTGTTATGCATCTCTAAAGTTCATATTTATTAATGGCTAATGGAATGTTACGCCAATTTGGTTAAAATTATTAAACATATATAACATTTAAATCTTTTAGAGTTAGCAACAAGAGAAATTTTGCTGCATGATATTAAGTCATCCTTGTTTAAATTGATATAGCCTTAATTGATATATTTTCCTCTTTATGTTCTTATCCCATCAAAGTACATAGGCCTGCAAAACCTGGTACACCGAAATGAACAACTATATGGAAACAATCCTCCTGGTGGCGTTGCTTTACCTTTCATCCTGGTTCAGGTATTCTCATGTTTCTCTTGCTACTTTCCTTCTTTCTTTACTATGTCGAAGTTCTACTATGCACTTGCTCTTCATTACTGGAAAGTTGTTTTTCAGCGGTTCATGCATTATATATACATCTTATATTTTTGTATTCAGTTAGCAACATGACTTTTTTGTTCCTCCAATCTTTCGATCGACAGACTCGTCCACATGCAACCGTGGAGGTAGAAATATCGGAGGATATGCAACTGGTGCATTTTGATTTTAATAGGTAAACTGGGAGAACTCATTTAACTTTTTTTTTTAATTTTTTTATGTATAAAGATTAGAGTATTTGCATATGACAATGCGATTTTACATTGCTGAATGCAGCACCCCATTCGAATTGCACGATGACTCATATGTCCTTAAGGCAATGAGATTCTGCGGTAGAGAGCAGCAAAATGGAACTGTGGCTCATGAGTCAATGGTCAATGGAGGGGAGAGCTCGAGCTTGCAAGCATCTATGCTTCCACCTCAAATGCCGCAACATGATCCCATGAGGCCCTGTTCCTCTGCAATGGTGTCCAGTTCACCTCAAATTCCAGGCATATTGAAAGCACGCTCGGTATTGAAGAATGAACACTGATAGATAGCATGATTTTTAACTTTATATTTGCGCCGAGATGTTTATTGCACCAGTTATTCTCTGTTTTCATGTATAGTGCAAGTGCAGGTTATAGCGAGCTGATGTGCGGACACTAACCCATACTTTGCATTGGTTTTCAAAGTTGATGTTTTTGTCATGTAAATTTTTGATTTTTTGGTTATGTGCTTGTTTGACTTTACAATGTTTTGATGTTTCAGATGCTAGATTTTCTTTTTTAGATGAATTCAATGTATCTTCATGGTTCTGAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249428.1	7.3e-130	transcription factor-like protein DPB
Swissprot	Q9FNY2.1	1.4e-101	E2F dimerization partner protein B
trEMBL	A0A8B9A7Q1	1.4e-122	transcription factor-like protein DPB

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G03415.1	68.39	2e-112	402	ATDPB;DPB	Transcription factor DP

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03580	AT5G03415.1	310	71	7	30	326	27	322	68.39	2e-112	402
AfisC3G03580	AT5G03415.2	310	72	8	30	326	27	316	66.13	3e-106	382
AfisC3G03580	AT5G02470.3	214	92	3	83	293	40	248	53.27	5e-63	238

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02319.17	E2F_TDP	Domain	99	180	87.8	3.2e-25
PF08781.7	DP	Domain	188	303	133.6	3.9e-39

Gene Ontology

Accession	Ontology	Name
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677	F	DNA binding
GO:0003713	F	transcription coactivator activity
GO:0005737	C	cytoplasm
GO:0005654	C	nucleoplasm
GO:0005667	C	transcription factor complex
GO:0006977	P	DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008134	F	transcription factor binding
GO:0008544	P	epidermis development
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019904	F	protein domain specific binding
GO:0042023	P	DNA endoreduplication
GO:0043276	P	anoikis
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0046982	F	protein heterodimerization activity
GO:0070345	P	negative regulation of fat cell proliferation
GO:1900740	P	positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway
GO:2000278	P	regulation of DNA biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04683	TFDP1; transcription factor Dp-1	EC:-	TGF-beta signaling pathway	ko04350
K04683	TFDP1; transcription factor Dp-1	EC:-	Cell cycle	ko04110

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network