result

Gene information

Detail information of AfisC3G03785

Location

Gene	Chr	Start	End	Strand
AfisC3G03785	chr3	679751308	679752621	+

Sequences

CDS

Protein

Gene

>AfisC3G03785
ACAAAACTGTGCATTTCATCGACTTACTAACTGCTGATGGTGTAAATTATCACAAGTCTTGCTTTAGATGCAGCCAATGCAATGGAAATCTTACCGTAAGTGTGTATATAACTTTTTTTTTGGTCGTCTTTTCTTTTTAAACTGGCACTTTATTTAAATGATAATTTTTGAGAAGTTACATGTTAACATACACAAGTGTGCATGTAACATTATGAGTACATACTTCCATGTACATGTACATGAAAATATCAGAATAATGATCGGATATTAGTGATGTTATATTCGTAAATTTTACACATTGGGTTATGATTACTACTTGATTCAGATGTGCAGCTATTCATCCATGGACGGTGTTCTCTACTGCAAGCCTCATTTTGAGAAATTGTTCAAAGAGACAGGCACATTCAATAAACGATTTCTAACCCGTAAGTTTACTACTTTATATAATTAACATCTATATATTTTATAGGATTATTGACTTGTCCTTTCATTGCATGTTTCTTTTGATCAATCCTGGATTATACCCATTCAGCCCCAAAGTCTCGAAGCAAAGATACAGTACGTTACACTTTCATCGTTTTAATTTAAATCTTAGTGTTCATCTGTTCTGAAAGTAACGTAAATATCGATTGATTTGCTTGGATATACACAGAATAGTGCACCAAGCAGAGTTTCTTCCATGTTTTCTGGGACACAAGATAAATGTGCAGTCTGTAATAAAACTGCGTACCCGCTTGAGAAGGTTCCATATATACCAATTTCTTTTAGCTATAATCCATTTGATGATGTTCATTTTCTGTGTCTAAATATCTATATACTAATATTAATGCCTAAACAATTTGTAGATAATAATGGAAGGGGAAAACTACCACAACAACTGTTTCAGGTGTTCACATGGAGGGTGCAAACTAACAACATCAAACTACGCATCGTTGAATGGAATTTTATACTGCAAGCATCATTTTGCACAGTTGTTCATGGAAAAAGGGAGCTACAGTAAATTAGCAGAGAGAGGTAAGAAGCACTCAGCTGATCATTCGGCAACGCAATCTGAATGTGGAGAGGCAGAGACAGGGGAAGTTGAGGCACAGCCAGAGTCTAACCCTGAGACAACTGAAACTGAATCATAAACAAATGTATTTATTCTTTTGAAAAAGTCGCAGTTTTTCTGTATCTAGTTATTTTTCTGATTTGTTGTTTGATTATTTGGAAAAGGATGTTATATATTTTGAATATATTAGTATGATAATCAACTCCTGATAGAGGCAAATATCCGTTGTATTTTTATCATAATATGTGATCAATTTGCTGCAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020573052.1	6.2e-47	LIM domain-containing protein WLIM2b-like
Swissprot	Q9M047.1	1.0e-46	Widely-expressed LIM protein 2B
trEMBL	D6MJW4	1.5e-50	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G61230.1	56.96	2e-47	185	PLIM2c	GATA type zinc finger transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03785	AT3G61230.1	158	63	2	1	157	45	198	56.96	2e-47	185
AfisC3G03785	AT3G61230.1	91	50	0	53	143	2	92	45.05	3e-19	90.9
AfisC3G03785	AT3G55770.5	130	45	1	1	127	44	173	63.08	1e-46	182

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC3G03785
Allium sativum	Asa2G02929.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00412.19	LIM	Domain	62	117	42.1	6.8e-11

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0001725	C	stress fiber
GO:0003729	F	mRNA binding
GO:0051015	F	actin filament binding
GO:0051017	P	actin filament bundle assembly
GO:0003785	F	actin monomer binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005925	C	focal adhesion
GO:0008270	F	zinc ion binding
GO:0030835	P	negative regulation of actin filament depolymerization
GO:0031529	P	ruffle organization
GO:0032154	C	cleavage furrow

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09377	CSRP; cysteine and glycine-rich protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network