result

Gene information

Detail information of AfisC3G03913

Location

Gene	Chr	Start	End	Strand
AfisC3G03913	chr3	701245563	701248915	-

Sequences

CDS

Protein

Gene

>AfisC3G03913
ATGAAGGTATGCTGATTTCAGGTGGATGAAAATGTAACAAGGGAGATCATTAACCGTAGTTCAAGGTATCAAAATATTATTTAAATTAAAGAGGTATTTTTGAAGTCTTCCTTTACTTTTTATGCACTGTCTTTCCAAATTAATTGATATTGCATGCCATGCCACAGTGCAATTGATATTTTCTTCCTCTAACCCATCGTTTTTTACGAATCAATTCGTGTACGTAGTAAATATATGTGCATTTTAGCAGATTTTATTTACTCTAATTCATCTTACTATAGTAATTGAATTTGCTTCTAGTGGTGAACTCTTTGAAGAAAATTGTACGGCTGGTCGCGATTCAATGAAGATGAGGTATTTATGATTCATTGCAAGATAATAATTCACATGCTGATTTTATGTATCTCATCTCCTGCTTTTATCGATGAACTAGTTATTGTGGATGATCAACAGTCCAGGTTCTTTTTTTAGCAACTGATATCTGGAGTCATTCATTGTCATTCAATTGTGCGTACCTTATTCTTATGTTAATTTAGATCATGAAAATCTCCTCACTCTAGAATTTAAAACATGACAAACTCCGAGTTTAGAATCATAAACTTGATTCACATGCATAAAATTGGAATATCTTACAACGTTTTTAAATTAACCTTAGGAACTATGTCATCGTGATCTCAAGCTAGATAACACTCTTTTGGATGGAAGTCGAATACCAAGCCTTACGATATGTGATTTTGGCTACTCAAAGGTACCTGATGGTTTAAATATTATCATTAGGAAGTCCTTGTTGCATAAACTAGATAAGGTCATTCCTTACTATCGGTTCACTTCATTTTTTCTTCCTTTAAAGGATTAAAGCAAACAATCTCAAAACCCATAAATAACCAAACCAACCACGACCCCTGTTATAAAATAATAAATAAAACACATAATGTTTGTCATATTATTGAAAATGTTAAATTATACAATAGAACAACAAACACATACCATTTTAATTTATATTCCCTTAAAACGGCAAACATAATGCTGTTTTAAGGTCAGTCCGTTTGGTCACTTCATTAATCGCAATTTTGGTGCATGGTTAGGTTAACTGATCTAAGCAAACCACTATAGATGCTGGGTGGCCTGTTGTGAACAAGCCATGGTTGGGAAGGGCATAACATTTTTCTGTTAGTTAATTAATATATTGAAAAGAAATTTATAATATATATACTCATATTGTAATGTCACTCTACCACGTTACTACATGTTGTCTTGTTTATTGCATTCACAACCCAAATCAAAAGTAGGAACTCCATCTTACATCACACCTGAAGTCATTTTTATAAGGGAGTATGATGGGAAGGTACTATTATATCGATTCATTTTACAGTTGTTATCCCGACTTTTGACCAGACATTATTCGGACAGACTGGACGGATCGAACTTGGAGTTATTGAGACAGGAAGCCCAGAGAGATAGCCTAGGAGTCCAAAAAACAAGTGCAGAAAGAGTCATAGCACTACAACAAAACAGCCTTTTTACAACGGGCAATATCCGTTGTAATATGGGTTTCGCAACGGGCATACGCCCATTGTATTAGGCCTCGTTGTAATAGGTCGACCGTATTTTACAACGGACAATAAACGTGTTGTAAAACGTTAAACTTGCAACGTGTTCTGACCGTTGTAATAGCCTATAATACAAGTGGCATAGCCCGTTGAATAGACTATAATACAACTGGCATAGCCTGCTGTAATACATGATATTGCAATGATTTCTGACTGTTGCAAAATAAATGCAAATTAAAAAAAATATCACAGCTGCATCCATGCAGTACATCCATACCAATAATGAATAATTTAACGAGTAATAAATATTATCATAAAACAATCAAAATTACATACGAAAAGACTAAAAGCTAGAGTCATAAAATTCTAGCACATTCCAAAAAGTTAGATAAGTTTACATTGACATAGTTCTAACATACACATGACAACTAGTTTCATAACAGCCAAATACATAAAGCATTAACACATAAGCATAAAGCGTTTGTCAACGAACTCATCTTTTTTTTATCGTCGCTTTCTCTTTTCAGGCTCTCTTTCTCTTTTCCTTTTGTTTTTCTTCTTGCTTTTATCTCTATAATCTTTCTCTCTTTCTTCTTTCGTCTATATGGACACCAGTTTATATGTGCAATAATTGAATGGTAACATGACCTTATAAGTTATAGTCAATGAGCAAAGTAATGCTACTAAATATATAAACAAAATGTTCATATCTGGTTTAAACAAAAATATAAAAATCTAGCAATAATCTTAAAATATATGACGTTGATATGAATGATATAAACATCACGTCTGAATATATTTTTAGCAGAATCTGCTATATGTAGATCAAGAAAACTAATTGTGGAATTTTGAGTATGCGTGCATGCGTACGTACATACATATCCTTCATCTATATAGGAATTATATATATAAATATATATGTGTGTTTAAAAAAGCCTATATTTTAAATGTTTGAAAAAGAATAAATCTTATCCAAAAACTAAAGATAGTGAAGTAAAATAATTTATACTTCACTTAGCTAAGCCATAATAAGTCAGGAGGATCAAATGTAAACAATTGCTAAAACCAGATGAGATAAAATATAATTCTAATTCAATGAAAATATAGATAATTTTGACCACTTACCCAAAAAAACGGCAAAGGAATATTTCCAATTAATCGCACACATACACACTAATAGCATCTCTAATCAAATCAAAATCACCCACTAATACATCCACTAATCAAATCCCCTCCCATCTAAAAGCCGTAAAGGATGACGTCGCCGAACGTCGCCAACATCGTCAAACCACCGCGGCTCTCGCGGTGTACGCGACAGGAGATCCTAACCCTGATCGAAGGCAAACGGATGGTAGAAAGCCGGGGCAAAAGCCGGTCTGGTTCGCTAACCCGGATCTGAACCCGGTTGAACCGAAATGGGTGTCGGTGTCGAATTACTGCAAGGAGCACGGGGTTGATCGTGGGCCGGTCCAATGCCGTAAGAGGTGGAGCAACCTGGCGAGCGATTACAAGAAGATCAAAGAGTGGGAGATGGGGATAAGTAATAATAATGGTAATGGGGAGGGTTATTGGGTGATGAGGAATGATGTGAGGAGAGAGAAGAAGCTTCCAGGTTTCTTCGATAAGGAGGTTTATGACATACTTGATGCGGGGATGGTGGTGGGGGAAGGGAAGGAGGAGGAGGATGTGGAAATCGTGTTCGATGGTGAGAGGAGGGCGGAGAAGGATGCGGGGTTGTTTGGGGAAGAGGAGGAGATGGTCGGCGGCGGAAGGGTTTTAATTTGGATCTGGATGCAGATTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	OVA09677.1	7.0e-35	Myb-like domain
Swissprot	Q8VZ20.1	3.0e-35	Protein ARABIDOPSIS SH4-RELATED3
trEMBL	A0A200QGZ7	5.0e-35	Myb-like domain

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G33550.1	76.47	1e-34	143		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03913	AT2G33550.1	85	17	1	84	168	73	154	76.47	1e-34	143
AfisC3G03913	AT4G31270.1	125	69	3	87	197	47	168	31.20	1e-12	69.7
AfisC3G03913	AT2G35640.1	85	50	1	83	164	55	139	37.65	4e-10	61.6

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13837.3	Myb_DNA-bind_4	Domain	87	127	39.4	5.5e-10

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003729	F	mRNA binding
GO:0016020	C	membrane
GO:0042742	P	defense response to bacterium
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0035556	P	intracellular signal transduction
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005985	P	sucrose metabolic process
GO:0006636	P	unsaturated fatty acid biosynthetic process
GO:0040007	P	growth
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009739	P	response to gibberellin
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0010029	P	regulation of seed germination
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019432	P	triglyceride biosynthetic process
GO:0042803	F	protein homodimerization activity
GO:0046777	P	protein autophosphorylation
GO:0048366	P	leaf development
GO:0050777	P	negative regulation of immune response
GO:0070300	F	phosphatidic acid binding
GO:0071219	P	cellular response to molecule of bacterial origin
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0080022	P	primary root development
GO:0080167	P	response to karrikin
GO:1902456	P	regulation of stomatal opening

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network