result

Gene information

Detail information of AfisC3G03934

Location

Gene	Chr	Start	End	Strand
AfisC3G03934	chr3	703864048	703869231	+

Sequences

CDS

>AfisC3G03934
ATGGGAAGCAATCCATCAATTCAAACAAACAAAACAATGGAGTACAAAAACATCAAAGAGGAAGCAGAAAAAGAAATGGCTAAAGCAGAAGAATGCTATAAACTGAACAATATACTAGGTGCAAATAAGCACATAACAAAAGCTCATTCATTAAACCCGTCTCACCCAAATATAGCTAAGGTTATGGCAGCCATTCGGGTTCATGTTGTTGCACTGGATAAGCCATTCAGACCATCTACAGACTACTGGTGCAGGATACTTGGCTGTAACTCTACTGATGATCTTCAGACCATGAAACTGCAGTGCAAGAAAATGTGCTTGCTTACTCATCCCGATACAAATCCTTCTATTTGCGCTGATGAAGCATTTAAAATTGTATCTGATGCTTGGGAGGCTTTGTCCGCATCACAGTCTCGGAATCAATCCAAGGATAACACTGAATCTGATAATTTCAGAAATACCAATTTTGGTGCTTCAAAACAACATAACCAAAGTACAAGTTCATGCAACAACGATGGCAATCAATATAATAAGAAGACTTCATACAACGACTTTGAGTCCAATGATTCGTCCACTAATTTGGATGCAAATTCAGAGAGTTCATCAGAAAATGTTGGTGAAAATTCCAATACTCACAGTCAAAGCTTTGCAGGAGACCATAATACTCATTCTTCAGACTATGATTACAAAACTCATTCTTCCAAAGATAATTTTTCATCCACAAGCAAGCCTAGCTTTTTTTATGATGGTAGCGACAATAATGCAGAATACACTTTTGCTTCCAAGTTCAAAGGAAAGATTGACATGGAGAACATGCAAGCAACAGCTTTGGTGCAAACGGTGTTATCATGGTCACTAAGGGACGTCTTCAAGAGAAATTTCTTTAAAGATGAGGTCAAAACAATTCCAAAGACTTTTACCTCTTTGAAGGAATATTTAGACTCGTTTACCAGCCCACTAACTGAAGAAGTGCATGCTGATCTATGTTCGAATCTGGAGACAATATCACAAGCACCTTATGTCGAAGTCGAATATATTGAGGAGCTATCAGCAGCACAATTGCAATACTACATCAAAGTTAAAAACCAGGACAAACATTTAGATGGCAAAGAAGCATACACACCAATCGAAGCTGATATGCTTGTTCTATCTGAATGCAAAATCAAACACATATCCGACCTCATGAAAAATGAAAGATCCTATGTAATTGCATACGCCTTAAAAGCTGGAAATGAGACCAATGTTTTATCACCAAATGAGCACATTATCAAAACAACCGAAAGATTTCCAATAGAGAAATATTTCAAAAAACATGGGAAAGGACCACAACAAATAAAACCTCTTTATGCAACTCACATTCTAACCATGATTATTTTCAATCGCATATGGAAATCACTCGATCAACATATGTCTGATCAAAGAAGTAATGACATTCTTAATAAGGTTTGGAATTATGATGTTCTGGCAGCAGAAGGAGGTACTTCAATCTCATCATACTATGTCGATGACCTTGAAAAATTCAAGCTTAACAAATCTCAGTTTGATGTTGTAAAAGACTGCCTATCAACAATTTATTATCAAAATCTCAAAAGTACAACAATCAAGCTCATATGGGGACCTCCAGGTACTGGTAAAACTAAAACAATCAGTAGTTTATTGTACATTTTGCTTCAAAAGAACCATAAAACTCTTGCATGTGCACCAACAAACACTGCTATAAAAGAAGTTACTACTCGACTACTGAAATTAGTGAAAGAATCATTGAGTCAAGAGCACTTCAGGCTTGGAGATTTGGCTTTGTTTGGAAATAGTAAACGAATGAAAATCGATAATGATCTTAGCGAAGTGTTCATTGAAGATCGGGTTGAAAGGTTACGAACAGTTTTTGTGCCTATAACAGGTTGGAGGCATCAACTTAGCTCTATGCTAGATCTGATTGAAAATGCAACTTCACAATATGAGCGGTATTTAAGAATTGTGGAAAATGAAGAGGGATCGATAAAATTGCAGAAATTAACACTAAAGGAATATATTGTAAAACATTTCTGTTCACACGCGAAAGAGTTGTGTGTTTGTTTGACAACTATGTCTACAGATCTACCAAGAATTTCTATCTCTGCACAAAACTTGGAAAATATGAGTATGCTCATAGAATTGGTTGATTCTTTCGGGGAATATTTGAAGTCCGTGAGAGTTACTAGCAACATGCTAGCAGAAATATTCGAAGAATCAATTCTTGGAATGTTGAAGGATTGGTTATTTAGGACAAATGATTATATTGATATAAAAAACAAGTTGCGAAGCACGCGGTCTCATATTGTGAATATTCTACGAGTCCTGTCCAGAACTATTTCTCTTCCTGATCTACGTAACAGAAGCTCAACACAGGAATTCTGCCTACAAAATGCAGTTGTAATAATTTGCACAACTAGTACATCCTTTAAATTACATAACGTGCAAATGGAAAAGCCGATAGAAAATTTGATAGTTGATGAGGCAGCGCAGTTGAAGGAATGTGAGTCTTTGATTCCTTTACAGCTGCCTGGAATTCGCCACGCAATTTTTATAGGCGACGAACACCAATTACCAGCTTTGGTCAAAAGCAAGATAAGTGAAAATGCTGGCTTCGGCAGAAGTCTTTTTGAAAGATTGAGCTCTTTAGGACACAAGAAACACTTACTTGATGTTCAATATAGGATGCATCCTTCCATAAGCAAATTTCCAAATGCTAATTTCTATGATAAAAGAATTTCCGATGGTCCAAATGTGTTGCATCCTAGCTATGAGAAACAGTACTTGGCTGGAAAAATGTATGGCCCTTATTCGTTTATAAGCATTGAAGCTGGAAAAGAAACATCTGGTAAGAATGGAAGAGGGTGGAAGAATATGATAGAAGCTGAAGTTGTAGTGGCAATTATCAAAAGCCTTTATAGAGCATTCAGTACCAAAAAGGAAAAGATTGGAGTTGGAGTTATTTCACCATATACAGCTCAAGTTTCAGCTATACAAGAAAAAGTAAAGAAAACATATTCGACTAAGGATAATGTTTCGGTCAAAGTTCAATCTATCGATGGATTTCAAGGAGGAGAAGAGGATATAATAATCATATCAACTGTGAGATCCAATAAAGCTGGGAATGTGGGTTTTCTTGATAAGCTTCAAAGGACAAATGTGTCTCTAACCAGAGCAAAGCATTGCTTGTGGATAGTAGGAAGTGGATCAACCTTGTTAAAAAGCAATTCAGTATGGGAAAAGATAGTAAGAGATGCGATGAATAAAGGTTGCTTCTTTGATGCAAAAGATGACCATACTCTGGATGCTGTAATTGTCAAGGCAGCCATTGAAAATGATGAACTTGATAATATAGTAAAAATGGACACACTCCGTATTCAAAAGAAAAATTGGAAGGACACTAATGGCCCCTTTCCAAAGGTGTGCAACAGGTATAACACACCTGAAGGATGCAAGTTCGGTGCCAGATGTAATTTTTCACATGGTGAAACAAGTCGGAACATAGTAGACAGAACTGCAACAAATGATCCAGGCTTGGATATGAAACCAACCACATCTACTTCTAACTTAAAGACAAAGATCTGCAGGGAGTTTGCCAAAGGTTCCTGCATGTATGGTAGTAGATGCAGTTTTGCTCATGGTTCAACCGAGTTGTAG

Protein

>AfisC3G03934
MGSNPSIQTNKTMEYKNIKEEAEKEMAKAEECYKLNNILGANKHITKAHSLNPSHPNIAKVMAAIRVHVVALDKPFRPSTDYWCRILGCNSTDDLQTMKLQCKKMCLLTHPDTNPSICADEAFKIVSDAWEALSASQSRNQSKDNTESDNFRNTNFGASKQHNQSTSSCNNDGNQYNKKTSYNDFESNDSSTNLDANSESSSENVGENSNTHSQSFAGDHNTHSSDYDYKTHSSKDNFSSTSKPSFFYDGSDNNAEYTFASKFKGKIDMENMQATALVQTVLSWSLRDVFKRNFFKDEVKTIPKTFTSLKEYLDSFTSPLTEEVHADLCSNLETISQAPYVEVEYIEELSAAQLQYYIKVKNQDKHLDGKEAYTPIEADMLVLSECKIKHISDLMKNERSYVIAYALKAGNETNVLSPNEHIIKTTERFPIEKYFKKHGKGPQQIKPLYATHILTMIIFNRIWKSLDQHMSDQRSNDILNKVWNYDVLAAEGGTSISSYYVDDLEKFKLNKSQFDVVKDCLSTIYYQNLKSTTIKLIWGPPGTGKTKTISSLLYILLQKNHKTLACAPTNTAIKEVTTRLLKLVKESLSQEHFRLGDLALFGNSKRMKIDNDLSEVFIEDRVERLRTVFVPITGWRHQLSSMLDLIENATSQYERYLRIVENEEGSIKLQKLTLKEYIVKHFCSHAKELCVCLTTMSTDLPRISISAQNLENMSMLIELVDSFGEYLKSVRVTSNMLAEIFEESILGMLKDWLFRTNDYIDIKNKLRSTRSHIVNILRVLSRTISLPDLRNRSSTQEFCLQNAVVIICTTSTSFKLHNVQMEKPIENLIVDEAAQLKECESLIPLQLPGIRHAIFIGDEHQLPALVKSKISENAGFGRSLFERLSSLGHKKHLLDVQYRMHPSISKFPNANFYDKRISDGPNVLHPSYEKQYLAGKMYGPYSFISIEAGKETSGKNGRGWKNMIEAEVVVAIIKSLYRAFSTKKEKIGVGVISPYTAQVSAIQEKVKKTYSTKDNVSVKVQSIDGFQGGEEDIIIISTVRSNKAGNVGFLDKLQRTNVSLTRAKHCLWIVGSGSTLLKSNSVWEKIVRDAMNKGCFFDAKDDHTLDAVIVKAAIENDELDNIVKMDTLRIQKKNWKDTNGPFPKVCNRYNTPEGCKFGARCNFSHGETSRNIVDRTATNDPGLDMKPTTSTSNLKTKICREFAKGSCMYGSRCSFAHGSTEL

Gene

>AfisC3G03934
CTTCACTTGATATAAAACTCTTTGGTTTCAAAACCACTTCAGCATTATACACACAGTTCATGGGAAGCAATCCATCAATTCAAACAAACAAAACAATGGAGTACAAAAACATCAAAGAGGAAGCAGAAAAAGAAATGGCTAAAGCAGAAGAATGCTATAAACTGAACAATATACTAGGTGCAAATAAGCACATAACAAAAGCTCATTCATTAAACCCGTCTCACCCAAATATAGCTAAGGTTATGGCAGCCATTCGGGTTCATGTTGTTGCACTGGATAAGCCATTCAGACCATCTACAGACTACTGGTGCAGGATACTTGGCTGTAACTCTACTGATGATCTTCAGACCATGAAACTGCAGTGCAAGAAAATGTGCTTGCTTACTCATCCCGATACAAATCCTTCTATTTGCGCTGATGAAGCATTTAAAATTGTATCTGATGCTTGGGAGGCTTTGTCCGCATCACAGTCTCGGAATCAATCCAAGGTACTTGTTATTTGCTGAAGATTTTAATGAAACAGAGTTATCATAAAAACTGTTTACCTATTGTTTATGACTAATAGGTCCATAGCGTGAATCATGTTGCAGTTATCATTATGTATTCCATATCATTCATATAACCGCAGAAATGGTCATATGTGCCCAAACTGGAATTCAATTGGGAAACTATAGTTTTATTTTGATTTATTTTCTACATATAATACTAAAACCGAGTGTATTTGCTCAGCTATATATTCAGCAGTTGAATTTTGTCAAATCTAAGTATCTTAATGGATATTTCTTTTACCATGTTTAGTTTATGAACACATTTTTATCAGCAAAGAAATATATAGAAACTGAAAAAAAAATAGAATTTGATTGCCAAATGAAATGGGTAAACTTGATGGTGCAGATAGTGCGGCTCAAATTGAATGTTTGGCAATAATAATAAGCTTGATGTCATACTAGTGCATAGGCCTCTATTTATATATTAACTTCTAATATCCGCTATCAATTTGTGGGTATAACTTTGGTGTTGCAAAAATAGTGCCAATTTACTTTAGTTAACTATTATTTTATCAGCATGATCATTCTACTAGGAAACAATTTTTAAGCAGAGAAACTTAGAATTTTATGTTTTTTTTTCCCGCTCAAAATGTTTTCTTTTTGTTTACCATTTTTACTAGACCTGATGACTGTTTTATTTTTCTTTTTCTGTTCACAATCACAGGATAACACTGAATCTGATAATTTCAGAAATACCAATTTTGGTGCTTCAAAACAACATAACCAAAGTACAAGTTCATGCAACAACGATGGCAATCAATATAATAAGAAGACTTCATACAACGACTTTGAGTCCAATGATTCGTCCACTAATTTGGATGCAAATTCAGAGAGTTCATCAGAAAATGTTGGTGAAAATTCCAATACTCACAGTCAAAGCTTTGCAGGAGACCATAATACTCATTCTTCAGACTATGATTACAAAACTCATTCTTCCAAAGATAATTTTTCATCCACAAGCAAGCCTAGCTTTTTTTATGATGGTAGCGACAATAATGCAGAATACACTTTTGCTTCCAAGTTCAAAGGAAAGATTGACATGGAGAACATGCAAGCAACAGCTTTGGTGCAAACGGTGTTATCATGGTCACTAAGGGACGTCTTCAAGAGAAATTTCTTTAAAGATGAGGTTAATATTTTAAGCCAATTTTTTGTCGATTTCCCCTTTAGACTTCTTCTATGACTGGTACATGAAATAAAATGATTTTGTGTCTGAATTTTCCATTTTTACAGGTCAAAACAATTCCAAAGACTTTTACCTCTTTGAAGGAATATTTAGACTCGTTTACCAGCCCACTAACTGAAGAAGTGCATGCTGATCTATGTTCGAATCTGGAGACAATATCACAAGCACCTTATGTCGAAGTCGAATATATTGAGGAGCTATCAGCAGCACAATTGCAATACTACATCAAAGTTAAAAACCAGGACAAACATTTAGATGGCAAAGAAGCATACACACCAATCGAAGCTGATATGCTTGTTCTATCTGAATGCAAAATCAAACACATATCCGACCTCATGAAAAATGAAAGATCCTATGTAATTGCATACGCCTTAAAAGCTGGAAATGAGACCAATGTTTTATCACCAAATGAGCACATTATCAAAACAACCGAAAGATTTCCAATAGAGAAATATTTCAAAAAACATGGGAAAGGACCACAACAAATAAAACCTCTTTATGCAACTCACATTCTAACCATGATTATTTTCAATCGCATATGGAAATCACTCGATCAACATATGTCTGATCAAAGAAGTAATGACATTCTTAATAAGGTTTGGAATTATGATGTTCTGGTGAGTTTTTAAATGGTATAATTTGATGCTCTGTTATTTTGTTATATCATAGAGACCTTGCTTTATCAATGCATTTACTTATATTTAACAGGCAGCAGAAGGAGGTACTTCAATCTCATCATACTATGTCGATGACCTTGAAAAATTCAAGCTTAACAAATCTCAGTTTGATGTTGTAAAAGACTGCCTATCAACAATTTATTATCAAAATCTCAAAAGTACAACAATCAAGCTCATATGGGGACCTCCAGGTACTGGTAAAACTAAAACAATCAGTAGTTTATTGTACATTTTGCTTCAAAAGAACCATAAAACTCTTGCATGTGCACCAACAAACACTGCTATAAAAGAAGTTACTACTCGACTACTGAAATTAGTGAAAGAATCATTGAGTCAAGAGCACTTCAGGCTTGGAGATTTGGCTTTGTTTGGAAATAGTAAACGAATGAAAATCGATAATGATCTTAGCGAAGTGTTCATTGAAGATCGGGTTGAAAGGTTACGAACAGTTTTTGTGCCTATAACAGGTTGGAGGCATCAACTTAGCTCTATGCTAGATCTGATTGAAAATGCAACTTCACAATATGAGCGGTATTTAAGAATTGTGGAAAATGAAGAGGGATCGATAAAATTGCAGAAATTAACACTAAAGGAATATATTGTAAAACATTTCTGTTCACACGCGAAAGAGTTGTGTGTTTGTTTGACAACTATGTCTACAGATCTACCAAGAATTTCTATCTCTGCACAAAACTTGGAAAATATGAGTATGCTCATAGAATTGGTTGATTCTTTCGGGGAATATTTGAAGTCCGTGAGAGTTACTAGCAACATGCTAGCAGAAATATTCGAAGAATCAATTCTTGGAATGTTGAAGGATTGGTTATTTAGGACAAATGATTATATTGATATAAAAAACAAGTTGCGAAGCACGCGGTCTCATATTGTGAATATTCTACGAGTCCTGTCCAGAACTATTTCTCTTCCTGATCTACGTAACAGAAGCTCAACACAGGAATTCTGCCTACAAAATGCAGTTGTAATAATTTGCACAACTAGTACATCCTTTAAATTACATAACGTGCAAATGGAAAAGCCGATAGAAAATTTGATAGTTGATGAGGCAGCGCAGTTGAAGGAATGTGAGTCTTTGATTCCTTTACAGCTGCCTGGAATTCGCCACGCAATTTTTATAGGCGACGAACACCAATTACCAGCTTTGGTCAAAAGCAAGGTACATTAATCATATTACACTTGAACATTATACAGTTCTTAGCTCTTACTATTATGTGAACTTTGCAATTTACCAGATAAGTGAAAATGCTGGCTTCGGCAGAAGTCTTTTTGAAAGATTGAGCTCTTTAGGACACAAGAAACACTTACTTGATGTTCAATATAGGATGCATCCTTCCATAAGCAAATTTCCAAATGCTAATTTCTATGATAAAAGAATTTCCGATGGTCCAAATGTGTTGCATCCTAGCTATGAGAAACAGTACTTGGCTGGAAAAATGTATGGCCCTTATTCGTTTATAAGCATTGAAGCTGGAAAAGAAACATCTGGTAAGAATGGAAGAGGGTGGAAGAATATGATAGAAGCTGAAGTTGTAGTGGCAATTATCAAAAGCCTTTATAGAGGTAATATAGTATAATATGGGCATTATTCTTATTCTGATATATAATAGTTACACCTGTAAGTTAATGATCATCGTAGACTTATGTTCCTTGTCATATTCTTTGGTCTGGCGTTACAGCATTCAGTACCAAAAAGGAAAAGATTGGAGTTGGAGTTATTTCACCATATACAGCTCAAGTTTCAGCTATACAAGAAAAAGTAAAGAAAACATATTCGACTAAGGATAATGTTTCGGTCAAAGTTCAATCTATCGATGGATTTCAAGGAGGAGAAGAGGATATAATAATCATATCAACTGTGAGATCCAATAAAGCTGGGAATGTGGGTTTTCTTGATAAGCTTCAAAGGACAAATGTGTCTCTAACCAGAGCAAAGTAAGAACCCTACATATACACAGTAAGTTTTATACTACCATGACTTGAATGCATGATCATAATTGGCAAATCATTTTGTGCAGGCATTGCTTGTGGATAGTAGGAAGTGGATCAACCTTGTTAAAAAGCAATTCAGTATGGGAAAAGATAGTAAGAGATGCGATGAATAAAGGTTGCTTCTTTGATGCAAAAGATGACCATACTCTGGATGCTGTAATTGTCAAGGCAGCCATTGAAAATGATGAACTTGATAATATAGTAAAAATGGACACACTCCGTATTCAAAAGAAAAATTGGAAGGTATTCTATCAATCTCAAACTTTCTCAATGCACCACAAAATTATAACTAACATAATATTTCATTTAAACTTTTTCAGGACACTAATGGCCCCTTTCCAAAGGTGTGCAACAGGTATAACACACCTGAAGGATGCAAGTTCGGTGCCAGATGTAATTTTTCACATGGTGAAACAAGTCGGAACATAGTAGACAGAACTGCAACAAATGATCCAGGCTTGGATATGAAACCAACCACATCTACTTCTAACTTAAAGACAAAGATCTGCAGGGAGTTTGCCAAAGGTTCCTGCATGTATGGTAGTAGATGCAGTTTTGCTCATGGTTCAACCGAGTTGTAGAAATCATTTTTTTAGAATTATTTTAGCAGAACTAAATTTGTGTGTTTGATTGAATATAGTCTTTTCTGCAACATATTAGTAAGGAAGAAATGTTTATCGTCAAGCACTAAGGTTTAAAGCATTCCCCATTCAGTTTACTTTTGCTCAACACTTGTTCAGTTTCTATGTTACTCCTTTCTGATGCC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249491.1	5.0e-255	helicase SEN1-like
Swissprot	Q00416.2	1.5e-46	tRNA-splicing endonuclease positive effector
trEMBL	A0A6P5ER60	1.2e-234	uncharacterized protein LOC109707103 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G65810.2	39.98	2e-168	590		P-loop containing nucleoside triphosphate hydrolases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03934	AT1G65810.2	888	459	17	277	1136	22	863	39.98	2e-168	590
AfisC3G03934	AT1G65810.1	888	459	17	277	1136	22	863	39.98	3e-168	589
AfisC3G03934	AT5G37150.1	875	455	22	269	1116	1	819	38.51	5e-163	572

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00226.28	DnaJ	Domain	85	141	30.9	2e-07
PF13086.3	AAA_11	Domain	508	869	143.5	8.9e-42
PF13087.3	AAA_12	Domain	877	1073	206.2	3.5e-61
PF00642.21	zf-CCCH	Family	1195	1218	30.9	1.6e-07

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000228	C	nuclear chromosome
GO:0000398	P	mRNA splicing, via spliceosome
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0006369	P	termination of RNA polymerase II transcription
GO:0003723	F	RNA binding
GO:0030529	C	intracellular ribonucleoprotein complex
GO:0035556	P	intracellular signal transduction
GO:0005737	C	cytoplasm
GO:0006281	P	DNA repair
GO:0006461	P	protein complex assembly
GO:0008026	F	ATP-dependent helicase activity
GO:0043005	C	neuron projection
GO:0030182	P	neuron differentiation
GO:0034599	P	cellular response to oxidative stress
GO:0043167	F	ion binding
GO:0044267	P	cellular protein metabolic process
GO:0044344	P	cellular response to fibroblast growth factor stimulus
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0048511	P	rhythmic process
GO:0048523	P	negative regulation of cellular process
GO:0060566	P	positive regulation of DNA-templated transcription, termination
GO:1901701	P	cellular response to oxygen-containing compound
GO:1902494	C	catalytic complex

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K10706	SETX, ALS4; senataxin	EC:3.6.4.-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network