result

Gene information

Detail information of AfisC3G03972

Location

Gene	Chr	Start	End	Strand
AfisC3G03972	chr3	709997774	709998863	-

Sequences

CDS

Protein

Gene

>AfisC3G03972
ATGGCAAACGCATACGATGTGCAATGGCGCAAAAATAATGAAGACGAGGAGTTATCAGAAATAATCTCTGTGCTAACGCAATCAATGGATAATTCTTCGCCTTGTATCAACAGCACACATGAAATGATGCTGCAGAACGATGATAATCGCAGGCATCTGGGCAAGTCTTTTGCTTCTTACACAAGAGGAGAGGCCTCTACAAGTACAAATGCAGGTGATATATCTTGCTAACTCATATATAACTCAAGAGATAGATAGTATATACATTGATCTGACTCTATTCATTTGTTATCGTTACTAATTAGCACATTGCCCATGCAGTTACAAGCAGTCGTGCAGTTCAGCCAGCACCAAGAGCAGCAGCAGCAGCAAGCCTGCAAAGGAAATATAGAGGGGTGAGACAAAGGCCATGGGGAAAATGGGCAGCGGAAATCCGGGATCCACAGAAAGCATGCCGTGTCTGGCTAGGCACATTCGAGACTGCAGAAGGTGCTGCCAGTGCATACGATGCAGCTGCCCTTAGATTTAGGGGCAGCAGGGCCAAACTCAACTTCCCTGAAAACGTCAGCAACCTCAGTACCCCCCCTCCTCCACCTCCTACTCCTCCTCCTACTACTACTACTACAACTTGTAATAATAGGTTACCATATCCAGTTTTGGATTCTGCCATGAATTCCAGTAGGGATTATTTGGAGTATTCAAGGTTGTTGCTAGGGAGCGAAGGGTATCAGGATATGAATCCCAGTTGCCTTTTGGATCGGCTGTTGGCTTCTGCAGGTACTGGTAGTTCATCTTCGGTGCATTATTCAGACGATCATGAATTGAATCAAGTGGTGTATGGTAGATTTGATTCTTCTGGAAATAGATGGTTGGATCAATCCCACTACCCTCCCTCTACATCTGGATAAGTTCGATAAACAGTTTTATTCTCTCTTAATTATGTCAAACAGTATATTACGTTCGTTCGTTCGTTCATTGAATTTTCATTTCTACCTTTTGTAATAATTTGGAGCTGAAATTAATAAAATTGAATGAAAATGAAAGAGTTGCAGTATGATCTGAAGTTAGTATACAATTTACTCGAATTAAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020583787.1	2.6e-31	ethylene-responsive transcription factor ABR1-like
Swissprot	Q7G1L2.2	4.6e-25	Protein RELATED TO APETALA2 6
trEMBL	A0A516EL76	1.9e-31	Cold-responsive element-binding factor 3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G61890.1	73.68	3e-27	118		Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03972	AT5G61890.1	76	19	1	79	153	74	149	73.68	3e-27	118
AfisC3G03972	AT5G13330.1	86	17	1	91	176	36	109	66.28	6e-27	117
AfisC3G03972	AT2G33710.2	65	14	0	89	153	65	129	78.46	4e-26	115

Ortholog group

Species	Genes
Allium cepa	g404011.t1
Allium fistulosum	AfisC3G03972
Allium sativum	Asa2G03119.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	93	142	49.1	4.7e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005730	C	nucleolus
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009749	P	response to glucose
GO:0009751	P	response to salicylic acid
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009873	P	ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0034059	P	response to anoxia
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048825	P	cotyledon development
GO:0051301	P	cell division
GO:0071456	P	cellular response to hypoxia
GO:0071497	P	cellular response to freezing

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network