result

Gene information

Detail information of AfisC3G04023

Location

Gene	Chr	Start	End	Strand
AfisC3G04023	chr3	721480560	721482483	-

Sequences

CDS

Protein

Gene

>AfisC3G04023
TGAACCCATTCATCTCCAAAACAAGCAACAAATCAAAATTCATCTCTCTCCCACCTAAACAATTAATACCTTTCCCTAAATTCAATAAAAACCCTAAATTCAATTAACCCACCTCCATAACAAATTCCCTTTTCACCCTTTCTCTATCCTTCCTGATAAGAATCCTTTTCCCAAAGAACCCAAATAATACAAAACCCTAGAAAAGCCAAACCAAATCCATGGTGGATGAACATGACCTTAAGTTCCTTGACCTTTACGGCGACAGCCACACCCCGAAACCCTACCAAAACCCTGACTCTGACCTCCTAGATGAATTCCTCGATTCCTCAATCGAAACAGCTACAGTTAATTATTTCAAAACCTTACTCCTACCCATTTCAATTCGAATCTTCAAACCTAATAGAAATCGTTTTTTTTtTCCGTTTCACGCAGGATACAAAAAGCTCGCACAACATCAACGAGGAGGAGGAGGAAGAAGAGCTCGAATGGCTGTGTAAAGACGTATTTCCTCCTGTAGAAACTTCTTTTTCTCCGATTACGGAAACGGTCCCGCCGCCAAATCTTACAAAAGCGACACCGGCGTTCAGAGTGCCAGTAAAAGCGAGAAGCGTAAAGAATCGAAAAAAGCGTCGGATTATTGAGCGAATAGTTCTGGTAAACAGACCACAGCGTCGGAGGTGCCGGCACTGCGCGGCGGAGGAGACGCCGCAGTGGAGGATGGGGCCGGAGGGGCCGAAGACGCTGTGCAACGCGTGCGGCGTCCGGTACAAGAAGGGCCGGCTTTATCCCGAATATCGGCCGGCGAATAGTCCGACCTTTTCCGCAGAGCTGCACTCGAATTCAACGAGAAAGATAATGGAAATGAGAAGCGGAAGTGGGAAACGTGGGCGACCGAAACTGGCAGTGTTGTAATTTTTCACATGTTTTCGTTTCTTTTTATTTGATTTAAATTTAAATTTAGAATTTCAGTTTTATTTTAGAATTTAGATAGAAATTTGGTTTGAATTGTTTGGTTGGACTAAATATTGGAAGATCCAGACCGTTGATAATTTTCAACAAATTTTTGATGATGGTTAGATTTTGATGAAAATTAATATATAGTGGGGAAGAAATGTTGGTTTTGGTCGCTGTGGCTAGGGCATGGAGATAGGATGCCAAATTTATATCAACCTCCAATTGGCAATAGATAAAGCAATGTGCACATGGCTGTTTAATTTTTGTTATGTAGGTCCCAAAGGTGATATTTTGAACGGGGGTGTCGTCATGAAAAGGAAAACAACTTCATATGACTTCCTTCTCCCTTGAAAAGTTGAATTCACATGATTTTGTTCACCCTCCAAGGAGATATAGGTGTATACGCCAAACAAAGCAATTTTTCTATTTTGAACGGTAAAAAAAATGTTATTATGAGCCCTTCAAATGAGTGTAAACCAAAATGACATTGAAAATTATTCATATCTATAAGATAATGGCATCTTTACTGTCTATAATTATTAAGATAAGAAACTGAATAATGTATCCCATGACTGGAATGAAATATCCAACGGAATATATTTGTTTTTGGTAAACAGACACCTAGATTAGACATTTTTTAACTAAAACTTCTGCCTTTGTTTGCTTCAGTTTCCAGCTTGTTTTTTTAAAGATTTGAAAAAGTATGATCTGTTTGTAAACTTTATGAAAGTCCAACAATACGTGCTTGTATACATGGCAATTATGTGCATCTAATGGCTATATGTATTTATTTTTTATCTATTAAAATTTAGCAGGATGCTTGTTATAAGCATAAAAGCTTCGTTGGTCTCAGTATCATTATTTTTAGCAGTCTCCGTGGTGGCATCGGATGTAAATCAATAGTAGAATTCCGTTGAGGGGTGGTTAGGAATGAGTTATGGTGGAGATCGCAAATCAGTGTTGAGATTTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020673450.1	2.2e-35	GATA transcription factor 7-like
Swissprot	Q8LAU9.2	1.3e-27	GATA transcription factor 1
trEMBL	A0A8T3ACZ1	7.3e-36	GATA-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G24050.1	63.54	1e-29	126	GATA1	GATA transcription factor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04023	AT3G24050.1	96	28	2	104	195	178	270	63.54	1e-29	126
AfisC3G04023	AT4G32890.1	65	15	0	123	187	197	261	76.92	1e-26	116
AfisC3G04023	AT4G34680.2	163	51	6	53	187	95	244	43.56	1e-26	116

Ortholog group

Species	Genes
Allium cepa	g499934.t1
Allium fistulosum	AfisC3G04023
Allium sativum	Asa2G03085.1
Arabidopsis thaliana	AT3G24050.1
Oryza sativa	LOC_Os03g05160.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00320.24	GATA	Domain	125	159	60.2	9.3e-17

Gene Ontology

Accession	Ontology	Name
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	F	RNA polymerase II transcription factor binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	F	chromatin binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0005634	C	nucleus
GO:0005667	C	transcription factor complex
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0009416	P	response to light stimulus
GO:0009845	P	seed germination
GO:0030154	P	cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network