result

Gene information

Detail information of AfisC3G04279

Location

Gene	Chr	Start	End	Strand
AfisC3G04279	chr3	769703677	769707038	-

Sequences

CDS

Protein

Gene

>AfisC3G04279
GTTGCAATCAGGAAGATACATGGTGAGTTCCACCTTTCGATTAATTTTTCTTTTCCTTCTTTCCCTACTATTTTCTTTATTCCCCAAGTTTGTTTTGGGGCTACAAATGGGTTTTTCACCAAGCTTATTTCTTTTATATTCTTGCTTTTTTAGGCAACGATGCTTCCTTTGACATATTGATGATTATCTTTGCTTCTGTCTTACTATTTGGGCAGCTCCGGCAATATTACACTCACTTTCGGGTATTGCTTTTCTTTTTCTCCCTTTCGTTTTCATTTCAGACAACATAGTATAATGATTTGTTAAATATAATTTTATAATTTGACAAATAATACTGTACAAAGATCCTGAGTAGATTCGATTACATGTAGTACCAAACTTATTTTAAGGAGAGAATTCATAATATGATATGTCTAATATGCGACCTTTGAACATGGAACAATGGGTACAAAATTTACAGGTAGAATGAGTCAGATTTTCAAAAGTGACATTATGTATAGATGATGTCATATGTAAGTAGGCATATTTATTGATTGCTTGTCAAAATACTGGTAATATACATTCATAATGTTCGGGCGTCCTGGTTATAGAATAAAGTAAGCACTACTTTGTTGCCACTAATGACTGAGATTTCCTGGGACATAGAATGAGAAATAAGGAGATCCAAGATTTGGTCTGCTGTTTATGCCCATAATAAGTGAAATGAAATTTTCTTTTACAGTTATAATCTACTTTCAATGAAGATTACCTTCACAAGTTTTTGCATCATTTGTACTTACCTAAAATTACGTTTGAGTTCAATGGTGAAAAGAAAATATTTTTGATGTTTTGTATAATTAATTTAAGTGAAATAAAAGTTTTACAGATATAGGAAATTTTGTGGTTCAATATCATATATACAAAACCCTCATATTTTTTTTTCAGCTTTGCATTTTTAGATATGTCAAAATTAAATACATTTATAGTATGTTTTTATGAACCAGACTTTGATGAAATCTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTCCATTAATAACCAAAAAGTCAAATTTATCCTTGTAAACTATGAAGAACTATGCACCTAACACCTTATGTACACACAATCCACATGAGTCACAAATCTGATAAGAAAAGTAGCACGAGTAAGGTTTCAAGAGGTGATATATATGTATATATATATATGTATATATATATATATATATATATATATATATATATATATATGTATATATATATATTCACATGCAATTAAGCATGTTTGATGATGGCATGACAAAATAGAAAGAAAAAAAATCCTCTTGTTTCCATGTGATCCATCAACCAGAACATCGATCATCCAAACATCTAAAACTTACAAAAATCAATTATACTTTTATATTTTGAATCTCTTTAAGGTATTTCTAAAATGTAACTGATTTTTTTATTAATTCTCCCTTTAATTAACATTAAACAGAATTAAAATGCAATTAATATTCTGGATCATTAAACCGAACTCCAATTAAAGAAAATGAATTGTAACCAATTCTCTACTTAGTTTGAATTCAAACTAAGTGGAAATAATAATAATTAATAAATTTCTTTTAACACTTCCTTTTTTGAAAACATATATTGTTGGGGCATAGATGGATAAACAATTTGGATGAGGAGTTGGTTTGCTTAATGTTTATTATGAGTAAAAGCCTACCAAATGAAATTCTAGAAAATCAAGCTTCTGCCTGCGAATTTTGAGGAAGTATGAAAATATTTTTTTCTTTCATTAAGACCACTTTGAAATTATATGTTTCCTCAAGATCAAGCAGCAAAACTTACGCATGTAAATTCGGAAAAAAGCATGCATTGACTTCAGGAAACATACTCTGGGTACAGAGTTTTCAAACTTATGATACTTTTTGCCAACTACCTTACCACTGGATAATCCCTTTCTCTCTTAGGGTCGTAAAATTGTGTTTTTATATTTCATATACACATCATGGACGTCATTGAACTGTGCTAATAATGGTAAGATACTTGGTTTCAGTAGTTAGATCAGTTCTTCCATTAAATCTTTTAGCCACACATGATAATCAATATTCAAAAAAATCACAAGCACAGATAGTTACTGCTTGATTATCTATTATTTCCTTCCTCTATAAACTTGCCCTGCTTAGATAACAATTCCACAAACACTTCACACTTTTTGACCTTCTTGTTACTTACTCTACATGTAGTTGACTACCAGAGTAGATTTTCTTTTAACAAATACTAGGTTTTAATACCTTTTTTGCGCTTGACCTCTTTGTCTTTTGCATTTTTTCCTTAATATTTCAATTATTGCACTCATTTCCTAAAAGAAGTTCCAATCATTTAAACAAATATCTATAAAATAAATTCTGTTTTTATTGAAAATATTTTCAGCTTTCCTAACTCGTCTCCAGCTTCGGAAATGGACAAAAGTAATGAGCTTTGGCATATGATTGGGGCAACCATGGTAAAAAAGGAAGAGACGGAAAATGAGAACAGTAAAGCCAGTAATGATCATTTAGATGGAAATTCAAGTTATGATCTTGAACAAGAAAATCAACGAAAAAGAAAATTGTGCCGCCATACTCCTCATCAAATTCAAGAACTTAAAGCTTTTTTCAAAAATTGCCCTCATCCTGATGAGACACAAAAAAACGAACTGAGCAAGCGGCTGTGTTTAGATCCAAAACAAGTGAAGTACTGGTTTCAAAATCACCGAACACAATTGAAGAACCAACTTGAAAGACATGAAAACTCACTACTCAAGCAAGAAAATGAAAGGCTTAGGTATGAACAAATCACCATAAGTGATGCAATTAGAAACCCGACTTGTAATAGTTGTGGTGGTAGCAAAAATCTTGGACGGTCATCACTCGAAGAACAACAACTAAGAGTCGAAAATGCTCGGTTGAAAGATGAGCTCAATATCATGCGCTCTCTCGCTGATAAATTTATTTGTGAAACAGCCACAACGAAGTCTTCCATTTCTCTAAATGACTCCTCGTTAGAGCTTGTTGTTGGATCTAATGTGTTTGGTAGCTTTGATAGCTTCAGTAACAATAACATGTCCAGCTCAGTTGGTAATGATGCAACTCTACCTTACAAACCCATGTCTAATTTTACTAGTGGAGTTGGTGATAGTATTGAGAAGTCGGCGACCGAACTTCCATTAAGTGAAACTATTAAGCCTCTTTGGACCCCTAGCCTTCTATGGAAGAAGTAGATTGGACTCTTAGAAGGATTTACCTGCATTTTCAACTTTAAAGTAAGGGAAGACTCTCAATTTTCTGTATTTTTTTTTCTCCTCTTTCTATGTTGGGATATTTTGAGACATTTAGTATTGTTACGTTTAGTATTGCTG

Functional annotation

Database	accession number	e-value	annotation
nr	PKU84071.1	1.4e-48	Homeobox-leucine zipper protein ROC5
Swissprot	Q6EPF0.1	1.2e-41	Protein RICE OUTERMOST CELL-SPECIFIC 5
trEMBL	A0A2I0X866	9.9e-49	Homeobox-leucine zipper protein ROC5

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G00730.1	50.51	2e-51	199	AHDP;ANL2	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04279	AT4G00730.1	196	90	2	17	210	102	292	50.51	2e-51	199
AfisC3G04279	AT4G00730.2	255	128	5	17	262	102	348	43.14	3e-51	198
AfisC3G04279	AT3G61150.1	165	80	1	17	178	77	241	49.70	7e-46	180

Ortholog group

Species	Genes
Allium cepa	g316937.t1
Allium fistulosum	AfisC3G04279
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	48	103	65.2	3.1e-18

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009828	P	plant-type cell wall loosening
GO:0009845	P	seed germination
GO:0009913	P	epidermal cell differentiation
GO:0010091	P	trichome branching
GO:0042335	P	cuticle development
GO:0043481	P	anthocyanin accumulation in tissues in response to UV light
GO:0048497	P	maintenance of floral organ identity
GO:0048765	P	root hair cell differentiation
GO:0048825	P	cotyledon development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network